Tc06v2_t008850.2

Overview
NameTc06v2_t008850.2
Unique NameTc06v2_t008850.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1548
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productserine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform, transcript variant X1
NoteSerine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596107
GenbankXM_007024380.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008850Tc06v2_g008850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008850.2Tc06v2_p008850.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto329617auto329617Theobroma cacaoexon
exon-auto329618auto329618Theobroma cacaoexon
exon-auto329619auto329619Theobroma cacaoexon
exon-auto329620auto329620Theobroma cacaoexon
exon-auto329621auto329621Theobroma cacaoexon
exon-auto329622auto329622Theobroma cacaoexon
exon-auto329623auto329623Theobroma cacaoexon
exon-auto329624auto329624Theobroma cacaoexon
exon-auto329625auto329625Theobroma cacaoexon
exon-auto329626auto329626Theobroma cacaoexon
exon-auto329627auto329627Theobroma cacaoexon
exon-auto329628auto329628Theobroma cacaoexon
exon-auto329629auto329629Theobroma cacaoexon
exon-auto329630auto329630Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto329631auto329631Theobroma cacaoCDS
CDS-auto329632auto329632Theobroma cacaoCDS
CDS-auto329633auto329633Theobroma cacaoCDS
CDS-auto329634auto329634Theobroma cacaoCDS
CDS-auto329635auto329635Theobroma cacaoCDS
CDS-auto329636auto329636Theobroma cacaoCDS
CDS-auto329637auto329637Theobroma cacaoCDS
CDS-auto329638auto329638Theobroma cacaoCDS
CDS-auto329639auto329639Theobroma cacaoCDS
CDS-auto329640auto329640Theobroma cacaoCDS
CDS-auto329641auto329641Theobroma cacaoCDS
CDS-auto329642auto329642Theobroma cacaoCDS
CDS-auto329643auto329643Theobroma cacaoCDS
CDS-auto329644auto329644Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008850.2 ID=Tc06v2_t008850.2|Name=Tc06v2_t008850.2|organism=Theobroma cacao|type=mRNA|length=1548bp
ATGAACGGAGGCGATGAGGTGGTCGCAGCTCCGGCGGGCCCGCCACAGCC
GTTGGATTGGAAATTCTCTCAGGTATTTGGTGAACGAACCGCTGGAGAAG
AAGTTCAAGAAGTTGATATTATTTCAGCAATTGAATTTGATAAAACCGGG
GATCATCTTGCCACTGGTGACCGTGGGGGGCGGGTGGTTCTCTTTGAGAG
AACAGATACAAAGGATCATGGTGTACCGAGAAGGGATCTGGAGAGAATTG
ATTATCCAATCAGTCGGCACCCTGAGTTCCGTTACAAGACGGAGTTCCAG
AGTCATGAGCCTGAGTTTGACTATCTCAAGAGCTTGGAAATAGAGGAAAA
AATTAACAAAATTAGATGGTGCCAAACGGCCAATGGTGCCTTGTTTCTTC
TTTCCACCAATGATAAAACCATCAAGTTTTGGAAGGTACAAGAAAAGAAG
GTCAAGAAAATTTCTGACATGAATTTGGACCCATCAAAAGCTGTAGGAAA
TGGCAGCATTGCTAGTTCAAGTAATTCATGTAGCCCCAAACCTTGTGTTG
CAAATGGAGGGTCCCCTGACAGATCCTACAACTATTTGGGCAATGACTTT
TCTTTCCCACCAGGAGGCATTGCATCATTACGTTTACCTGTGGTAGTAAC
AAGTCTGGAGACCAACCTAATGGCCAGATGTCGAAGAGTATATGCCCATG
CACATGATTATCACATCAATTCTATTTCAAATAACAGTGATGGCGAAACT
TTTATATCAGCTGATGATCTGCGTATAAATCTTTGGAACTTGGAAATTAG
CAATCAAAGTTTCAATATTGTTGACGTAAAGCCTGCAAACATGGAGGATC
TAACTGAGGTTATAACATCAGCAGAGTTTCACCCTACCCACTGTAATATG
TTAGCATATAGTAGTTCGAAGGGCTCAATTCGCCTCATTGATTTGCGGCA
GTCAGCGTTGTGTGATTCTCACACCAAATTGTTTGAAGAACCGGAGGCAC
CTGGTTCTAGATCATTTTTTACAGAGATAATTGCCTCAATCTCAGATATT
AAATTTGCTAAGGATGGAAGATACATACTTAGCCGTGATTACATGACTCT
TAAGTTGTGGGACATCAATATGGATTCAGGTCCAGTTGCGACGTTCCAGG
TTCATGAATATTTAAGACCTAGGCTGTGTGATTTGTATGAAAATGATTCG
ATCTTTGACAAATTTGAGTGTTGCCTAAGTGGTGATGGATTACGAGTGGC
AACAGGTTCCTACAGCAATCTATTTCGTGTATTTGGTTGTGCCCCTGGAA
GCACTGAGGCGACAACTTTGGAAGCCAGCAAAAATCCAATGAGGAGACAA
GTTCAGACTCCCTCAAGGCCTTCCAGATCCCTAAGCAGTATAACACGTGT
GGTCAGACGAGGAGCAGAAGCCCCTGGAGTTGATGCAAATGGAAATTCTT
TCGATTTCACGACCAAGTTGCTGCACCTAGCATGGCACCCAACTGAAAAC
TCAATTGCCTGTGCTGCTGCAAACAGCTTGTACATGTACTATGCATGA
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protein sequence of Tc06v2_p008850.2

>Tc06v2_p008850.2 ID=Tc06v2_p008850.2|Name=Tc06v2_p008850.2|organism=Theobroma cacao|type=polypeptide|length=516bp
MNGGDEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKTG
DHLATGDRGGRVVLFERTDTKDHGVPRRDLERIDYPISRHPEFRYKTEFQ
SHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKK
VKKISDMNLDPSKAVGNGSIASSSNSCSPKPCVANGGSPDRSYNYLGNDF
SFPPGGIASLRLPVVVTSLETNLMARCRRVYAHAHDYHINSISNNSDGET
FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM
LAYSSSKGSIRLIDLRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDI
KFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPRLCDLYENDS
IFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQ
VQTPSRPSRSLSSITRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPTEN
SIACAAANSLYMYYA*
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