Tc06v2_t008800.1

Overview
NameTc06v2_t008800.1
Unique NameTc06v2_t008800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1836
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ProductNADP-specific glutamate dehydrogenase, transcript variant X3
NotePutative NADP-specific glutamate dehydrogenase (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596099
GenbankXM_018123491.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008800Tc06v2_g008800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008800.1Tc06v2_p008800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto329372auto329372Theobroma cacaoexon
exon-auto329373auto329373Theobroma cacaoexon
exon-auto329374auto329374Theobroma cacaoexon
exon-auto329375auto329375Theobroma cacaoexon
exon-auto329376auto329376Theobroma cacaoexon
exon-auto329377auto329377Theobroma cacaoexon
exon-auto329378auto329378Theobroma cacaoexon
exon-auto329379auto329379Theobroma cacaoexon
exon-auto329380auto329380Theobroma cacaoexon
exon-auto329381auto329381Theobroma cacaoexon
exon-auto329382auto329382Theobroma cacaoexon
exon-auto329383auto329383Theobroma cacaoexon
exon-auto329384auto329384Theobroma cacaoexon
exon-auto329385auto329385Theobroma cacaoexon
exon-auto329386auto329386Theobroma cacaoexon
exon-auto329387auto329387Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto329388auto329388Theobroma cacaoCDS
CDS-auto329389auto329389Theobroma cacaoCDS
CDS-auto329390auto329390Theobroma cacaoCDS
CDS-auto329391auto329391Theobroma cacaoCDS
CDS-auto329392auto329392Theobroma cacaoCDS
CDS-auto329393auto329393Theobroma cacaoCDS
CDS-auto329394auto329394Theobroma cacaoCDS
CDS-auto329395auto329395Theobroma cacaoCDS
CDS-auto329396auto329396Theobroma cacaoCDS
CDS-auto329397auto329397Theobroma cacaoCDS
CDS-auto329398auto329398Theobroma cacaoCDS
CDS-auto329399auto329399Theobroma cacaoCDS
CDS-auto329400auto329400Theobroma cacaoCDS
CDS-auto329401auto329401Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008800.1 ID=Tc06v2_t008800.1|Name=Tc06v2_t008800.1|organism=Theobroma cacao|type=mRNA|length=1836bp
ATGTTGCTACCAGGTGGTGGATTAGGGATGAATTCTACGATGGATGATAT
GAACTTGATTCAGGCACAGAGGCATCTGGTCAGGGATCTTGGTGAGGAGA
TTGATTTGGAGATTGGACCTGGGGACGATGACCCTTCATTTGCCAACACT
CCTTCTCTCATTGGTGGCCCACCACGAGAACCTTCTGCAGAAGAGCAGGA
TGAAAATAAGCAGATGGCAATGGTCTCTCAACTTCCAAATGATGATCAAG
ATACGTCAAAGTCACAAACTCCAAAAAGGAAGAAGAAGGTTGTGAAAAGA
TGGAGAGAGGAATGGGCTGATACTTACAAGTGGGCGTATGTTGATGTGAA
GGAAGGAACAGCAAGGATATTCTGCTCTGTTTGTAAAGAATATGGTAGAA
AGCATAGAAGGAATCCTTATGGGAATGAAGGTAGTAGAAATATGCAGATG
AGTGCATTGGAAGAGCACAACAACAGTTTGCTTCACAAAGAGGCTCTCCG
TCTCCAAATGGCCTCGAAGGATAAGATTGTTGTTGATAAACCCATTTTTG
TAAAAGCTCTTATGTCCAAAACGGCTGGATCAATCATTGAAGCTGCACTG
AAAAGGGATCCCCATGAGGCTGAGTTCATACAATCTGTACAAGAAGCTGT
TCATGCTTTAGAGAGAGTGATTGCAAAAAATTCCCATTATGTCAGCATTA
TGGAGCGCTTGCTAGAACCTGAGCGTATGATTGTTTTTCGAGTTCCATGG
GTGGATGATAGAGGTGAAACACATGTCAATCGAGGCTTCAGGGTACAATT
TAGCCAGGCACTGGGTCCATGTAGGGGTGGTATTCGATTTCATCCAACAA
TGAACTTAAGTATTGCCAAATTTCTTGGTTTTGAACAGACATTAAAGAAT
GCTTTATCACCCTACAAACTAGGAGGTGCCGCAGGTGGAAGTGATTTTGA
TCCTAAAGGGAAAAGTGATAATGAGATCATGCGGTTTTGTCAAAGTTTCA
TGAATGAGATATATCGTTATTTTGGTCCTGACAAGGACCTTCCATCAGAA
GAAATGGGAGTTGGTATTCGAGAAATGGGATACCTCTTTGGACAATACAG
ACGTCTAGCTGGCCATTTTCAGGTTTTCTTCTCCCAGCTCATTCTTGCAG
AGATGAATAAAGATATCAAAGGACTGAGATGTGTTGTAAGCGGTTTTGGA
AAGATCGCAATGCATGTTCTGGAAAAGCTTGTTGCCGTTGGTGCTCTTCC
CATTACAGTATCAGATTCAAAAGGATATTTGGTTGATGAGGATGGATTTG
ATTATATGAAAATATCATTTTTGAGGGATCTCAAAGCTCAACAAAGAAGT
TTGAGAGATTATTCAAAGACTTATGCTCGGTCTAAGTACTATGATGAAGC
AAAACCTTGGAATGAAAGGTGTGATGTTGCATTTCCCTGTGGTTCTCAAA
ATGAAATTGACCAGGCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGT
ATACTTGTAGAAGGCTCAAACATGCCTTGCACTCCTGAAGCAGTTGATGT
ATTGAAAAAAGCTAATGTTCTCATTGCTCCTGCCATGGCCGCTGGTTCTG
GAGGGGTTGTTGCAGGAGAAATTGAACTAAACCATGAGTGTAATGTAATG
CATTGGTCACCAGAGGATTTTGAATCTAAATTACAGGAAGCAATGAAACA
GACATTCCATAGAGCTCTCAAAGCAGCAAATGACTTTGGTTATCAAAAAG
AAAGTCCTGAGGCTTTGCTACATGGAGCAGTCATCTCTGCTTTTCTGGCA
ATTGCTCAAGCCATGACTGATCAAGGATGTGTGTAG
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protein sequence of Tc06v2_p008800.1

>Tc06v2_p008800.1 ID=Tc06v2_p008800.1|Name=Tc06v2_p008800.1|organism=Theobroma cacao|type=polypeptide|length=612bp
MLLPGGGLGMNSTMDDMNLIQAQRHLVRDLGEEIDLEIGPGDDDPSFANT
PSLIGGPPREPSAEEQDENKQMAMVSQLPNDDQDTSKSQTPKRKKKVVKR
WREEWADTYKWAYVDVKEGTARIFCSVCKEYGRKHRRNPYGNEGSRNMQM
SALEEHNNSLLHKEALRLQMASKDKIVVDKPIFVKALMSKTAGSIIEAAL
KRDPHEAEFIQSVQEAVHALERVIAKNSHYVSIMERLLEPERMIVFRVPW
VDDRGETHVNRGFRVQFSQALGPCRGGIRFHPTMNLSIAKFLGFEQTLKN
ALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIYRYFGPDKDLPSE
EMGVGIREMGYLFGQYRRLAGHFQVFFSQLILAEMNKDIKGLRCVVSGFG
KIAMHVLEKLVAVGALPITVSDSKGYLVDEDGFDYMKISFLRDLKAQQRS
LRDYSKTYARSKYYDEAKPWNERCDVAFPCGSQNEIDQADAINLVNSGCR
ILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGSGGVVAGEIELNHECNVM
HWSPEDFESKLQEAMKQTFHRALKAANDFGYQKESPEALLHGAVISAFLA
IAQAMTDQGCV*
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