Tc06v2_t008710.1

Overview
NameTc06v2_t008710.1
Unique NameTc06v2_t008710.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length612
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 19 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductESCRT-related protein CHMP1B
NoteESCRT-related protein CHMP1A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596088
GenbankXM_007024349.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008710Tc06v2_g008710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008710.1Tc06v2_p008710.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto329130auto329130Theobroma cacaoexon
exon-auto329131auto329131Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto329132auto329132Theobroma cacaoCDS
CDS-auto329133auto329133Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008710.1 ID=Tc06v2_t008710.1|Name=Tc06v2_t008710.1|organism=Theobroma cacao|type=mRNA|length=612bp
ATGGGAAACACCGAGAAGCTCTTGAACCAGATCATGGACCTGAAATTCAC
GTCCAAATCGCTGCAACGCCAGGCGAGGAAGTGCGAGAAGGAAGAGAAAT
CTGAGAAACTGAAGGTGAAGAAGGCGATCGAGAAAGGGAATATGGACGGA
GCTCGGATCTACGCCGAGAACGCTATTCGCAAGCGCACGGAGCAGATGAA
CTACCTCCGGCTTGCGTCGCGACTCGATGCTGTCGTTGCTAGGCTCGATA
CCCAGGCGAAGATGACCACCATTAACAAGTCCATGGCTAATATCGTCAAG
TCTCTCGAATCTTCCTTGGCCACTGGCAATTTGCAGAAGATGTCAGAGAC
AATGGATCAATTCGAGAAGCAGTTTGTGAACATGGAGGTCCAGGCAGAGT
TTATGGAGAGTGCTATGGCTGGTTCTACTTCATTGTCCACACCAGAAGGT
GAAGTCAACAGCTTGATGCAGCAAGTGGCTGATGATTATGGGTTGGAGGT
CTCTGTTGGGCTGCCACAGCCAGCTGCTCATGCTGTGTCAACCAAGACAC
AGGAGAAGGTTGATGAGGATGATTTGTCAAGGCGGCTTGCAGAGCTTAAG
GCTAGAGGTTAA
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protein sequence of Tc06v2_p008710.1

>Tc06v2_p008710.1 ID=Tc06v2_p008710.1|Name=Tc06v2_p008710.1|organism=Theobroma cacao|type=polypeptide|length=204bp
MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDG
ARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVK
SLESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEG
EVNSLMQQVADDYGLEVSVGLPQPAAHAVSTKTQEKVDEDDLSRRLAELK
ARG*
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