Tc06v2_t008460.1

Overview
NameTc06v2_t008460.1
Unique NameTc06v2_t008460.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length915
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 28 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productinositol oxygenase 1
NoteInositol oxygenase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596054
GenbankXM_007024299.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008460Tc06v2_g008460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008460.1Tc06v2_p008460.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto328702auto328702Theobroma cacaoexon
exon-auto328703auto328703Theobroma cacaoexon
exon-auto328704auto328704Theobroma cacaoexon
exon-auto328705auto328705Theobroma cacaoexon
exon-auto328706auto328706Theobroma cacaoexon
exon-auto328707auto328707Theobroma cacaoexon
exon-auto328708auto328708Theobroma cacaoexon
exon-auto328709auto328709Theobroma cacaoexon
exon-auto328710auto328710Theobroma cacaoexon
exon-auto328711auto328711Theobroma cacaoexon
exon-auto328712auto328712Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto328713auto328713Theobroma cacaoCDS
CDS-auto328714auto328714Theobroma cacaoCDS
CDS-auto328715auto328715Theobroma cacaoCDS
CDS-auto328716auto328716Theobroma cacaoCDS
CDS-auto328717auto328717Theobroma cacaoCDS
CDS-auto328718auto328718Theobroma cacaoCDS
CDS-auto328719auto328719Theobroma cacaoCDS
CDS-auto328720auto328720Theobroma cacaoCDS
CDS-auto328721auto328721Theobroma cacaoCDS
CDS-auto328722auto328722Theobroma cacaoCDS
CDS-auto328723auto328723Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008460.1 ID=Tc06v2_t008460.1|Name=Tc06v2_t008460.1|organism=Theobroma cacao|type=mRNA|length=915bp
ATGACTATCCTCATTGATCAACCTGAGTTTGGAGTTGAAGCAGGGTTTGA
CAAAGTCGATAATGTTGAGAAAGGAATGGTGTTGGATGGGGGATTTATGG
TGCCACAGACCAACTCTTTTGGCCACACTTTTAGAGATTATCACGTTGAA
AGTGAGAGGCAACAGGGTGTAGAGAACTTCTACCGGACCAATCATATTAA
CCAGACCTATGACTTTGTCAAGAGAATGAGAGAAGAGTATGGAAAACTTA
ACAAGGTGGGAATGAGCATATGGGAATGCTGTGAACTTCTTAATGATGTA
GTTGATGAGAGTGACCCTGACTTGGATGAGCCTCAAATCGAACACTTGCT
GCAAACAGCTGAGGCCATCAGAAAGGACTATCCTGATGAGGACTGGCTGC
ACCTGGCAGGCCTTGTCCACGACCTTGGAAAGGTGCTTCTTCATCCTAGC
TTTGGAGGCCTTCCCCAATGGGCTGTTGTAGGTGACACATATCCTGTTGG
TTGTGCTTTTGACAAAACAATTGTTCATCACAAGTATTTTGAGGAAAATC
CTGACTTTTATAACTCTGCTTACAACACTAAATATGGAGTGTACTCAGAC
GGATGTGGACTCAACAATGTGATGATGTCATGGGGGCACGATGACTACAT
GTATCTGGTGGCCAAAGAGAACAACACAACACTGCCGCCAGCAGCTCTTT
TCATTATTAGATACCATTCATTCTATGCATTGCATAGGTCAGAAGCATAC
AAGCACCTAATGAGCGAGGAGGATGTTGAGAATCTGAAGTGGCTTCAAAT
ATTCAACAAATACGATCTTTACAGCAAGAGCAAAGTCCGGATTGATGTCG
AAAAGGTCAAGCCGTACTACCTCTCCCTGATTGAAAAGTACTTCCCAGCA
AAGTTAAGATGGTGA
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protein sequence of Tc06v2_p008460.1

>Tc06v2_p008460.1 ID=Tc06v2_p008460.1|Name=Tc06v2_p008460.1|organism=Theobroma cacao|type=polypeptide|length=305bp
MTILIDQPEFGVEAGFDKVDNVEKGMVLDGGFMVPQTNSFGHTFRDYHVE
SERQQGVENFYRTNHINQTYDFVKRMREEYGKLNKVGMSIWECCELLNDV
VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLAGLVHDLGKVLLHPS
FGGLPQWAVVGDTYPVGCAFDKTIVHHKYFEENPDFYNSAYNTKYGVYSD
GCGLNNVMMSWGHDDYMYLVAKENNTTLPPAALFIIRYHSFYALHRSEAY
KHLMSEEDVENLKWLQIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPA
KLRW*
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