Tc06v2_t008240.1

Overview
NameTc06v2_t008240.1
Unique NameTc06v2_t008240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length927
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productauxin-responsive protein IAA26, transcript variant X2
NotePutative Auxin-responsive protein IAA18
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596026
GenbankXM_018123734.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008240Tc06v2_g008240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008240.1Tc06v2_p008240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto328236auto328236Theobroma cacaoexon
exon-auto328237auto328237Theobroma cacaoexon
exon-auto328238auto328238Theobroma cacaoexon
exon-auto328239auto328239Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto328240auto328240Theobroma cacaoCDS
CDS-auto328241auto328241Theobroma cacaoCDS
CDS-auto328242auto328242Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008240.1 ID=Tc06v2_t008240.1|Name=Tc06v2_t008240.1|organism=Theobroma cacao|type=mRNA|length=927bp
ATGGAGAGCGGTTGCTCGAAGAATGTTGAAGCATGCCCTCAACTTCTTGA
TTTGATTCCTCAACAACGACGGTGGCATATGAAGAGAGAAGATGAGAGAA
GGCATGGATCCTCAGAGGAGAAGAAGCTGGAACTGAGGCTTGGACCCCCA
GGTGAAGATAACTGGTCCATCAAAATAGACGCCACCAAAAGCAACAACAA
AGAAAGAGATGAGTCTTTGCTCTCACTCGGGTACTTCCCTTCAATGAACA
GCAATGCAAAACAGACGCATACATTTCCAACTCCAGAGGACCACCCGGTT
GGGTCTGTTTTATCCTCTCCATGGGCAAATACCCAGCAGCATAACCATCA
ACAGCAGACAAAGCCTCCTTCATTTCTTCAGTTCTCATCAACAGCCCCAC
AGACCTTGCCTGTTATAGCAAAGGAATCGTCACAGCCCTGTTGCACTAAA
GCGGTAGATTTGCATAATGCAGAGAAAACAGCATTCTCACTGCCTCCTGC
AAATACATCTGTGCCTCCCAACAGTTCTCAGAAAAGAACTGCCCCTGGTC
CAGTTGTGGGTTGGCCTCCAATTCGCTCTTTTAGGAAAAATCTTGCAAGC
AGCAGCTCTTCAAAACTAGCTTCTGAATCACCAAGTGTGGTCCCTCACAA
GGTTGCTAATGAAAAAGCAGCAACTGAACCTACTGGTAAAGGCCTATTTG
TGAAAATCAACATGGATGGAGTTCCCATCGGAAGGAAAGTGGATCTCAGA
GCCTATGACAGCTATGAAAAACTGTCAACTGCTGTTGATGAACTCTTCAG
AGGCCTCCTTGCAGGTGATGGAAGTGGGGGAGGGAAGCATTATGGAGTAA
ATCTTATTTCAAATTGCGAATTTCAAGGGCCAAGTTTTGGATTCATTTGC
TTGTTCTTATTGCAATTAAACTCCTAG
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protein sequence of Tc06v2_p008240.1

>Tc06v2_p008240.1 ID=Tc06v2_p008240.1|Name=Tc06v2_p008240.1|organism=Theobroma cacao|type=polypeptide|length=309bp
MESGCSKNVEACPQLLDLIPQQRRWHMKREDERRHGSSEEKKLELRLGPP
GEDNWSIKIDATKSNNKERDESLLSLGYFPSMNSNAKQTHTFPTPEDHPV
GSVLSSPWANTQQHNHQQQTKPPSFLQFSSTAPQTLPVIAKESSQPCCTK
AVDLHNAEKTAFSLPPANTSVPPNSSQKRTAPGPVVGWPPIRSFRKNLAS
SSSSKLASESPSVVPHKVANEKAATEPTGKGLFVKINMDGVPIGRKVDLR
AYDSYEKLSTAVDELFRGLLAGDGSGGGKHYGVNLISNCEFQGPSFGFIC
LFLLQLNS*
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