Tc06v2_t007910.1

Overview
NameTc06v2_t007910.1
Unique NameTc06v2_t007910.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1827
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
ProductruBisCO large subunit-binding protein subunit beta, chloroplastic
NoteRuBisCO large subunit-binding protein subunit beta, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595992
GenbankXM_007024201.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g007910Tc06v2_g007910Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p007910.1Tc06v2_p007910.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto327493auto327493Theobroma cacaoexon
exon-auto327494auto327494Theobroma cacaoexon
exon-auto327495auto327495Theobroma cacaoexon
exon-auto327496auto327496Theobroma cacaoexon
exon-auto327497auto327497Theobroma cacaoexon
exon-auto327498auto327498Theobroma cacaoexon
exon-auto327499auto327499Theobroma cacaoexon
exon-auto327500auto327500Theobroma cacaoexon
exon-auto327501auto327501Theobroma cacaoexon
exon-auto327502auto327502Theobroma cacaoexon
exon-auto327503auto327503Theobroma cacaoexon
exon-auto327504auto327504Theobroma cacaoexon
exon-auto327505auto327505Theobroma cacaoexon
exon-auto327506auto327506Theobroma cacaoexon
exon-auto327507auto327507Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto327508auto327508Theobroma cacaoCDS
CDS-auto327509auto327509Theobroma cacaoCDS
CDS-auto327510auto327510Theobroma cacaoCDS
CDS-auto327511auto327511Theobroma cacaoCDS
CDS-auto327512auto327512Theobroma cacaoCDS
CDS-auto327513auto327513Theobroma cacaoCDS
CDS-auto327514auto327514Theobroma cacaoCDS
CDS-auto327515auto327515Theobroma cacaoCDS
CDS-auto327516auto327516Theobroma cacaoCDS
CDS-auto327517auto327517Theobroma cacaoCDS
CDS-auto327518auto327518Theobroma cacaoCDS
CDS-auto327519auto327519Theobroma cacaoCDS
CDS-auto327520auto327520Theobroma cacaoCDS
CDS-auto327521auto327521Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t007910.1 ID=Tc06v2_t007910.1|Name=Tc06v2_t007910.1|organism=Theobroma cacao|type=mRNA|length=1827bp
ATGACATCATCTTTCAATGCCTTGTTGTATAGCTCCCCAGCATTTCCCTG
CAGTAGGACAATGGACAAAAAGTTTTTGAGTTCTTCAGGTCGACTATCGT
CATTTGATTCTATATCTTCAAGTGCCATTGTAGGCAGGAAACAGAATGTG
ATTTTACGGAGAGGACACTCTTCCAAAATTTGGGCTATGGCCAAGGAGTT
GCATTTCAACAAGGATGGTTCTGCTATTAAGAAGCTTCAAACAGGTGTTA
ACAAACTTGCTGACTTAGTTGGTGTTACTCTTGGTCCAAAAGGGAGAAAT
GTAGTTTTAGAGAGCAAGTTTGGCTCCCCAAAAATTGTTAATGATGGTGT
CACTGTTGCTAAGGAGGTTGAGTTGGAGCATCCTGTGGAGAACATTGGTG
CTAGATTGGTAAGACAGGCTGCTTCAAAGACCAATGATCTAGCTGGTGAT
GGAACAACCACATCAGTTGTTCTTGCACAAGGTTTGATAACTGAAGGTGT
TAAGGTGGTTGCTGCTGGTGCAAATCCTGTTCAAATTACAAAAGGTATTG
AAAGCACTACTAAGGCCCTGGTGTCTGAACTTAAGATGATGTCAAAAGAG
GTTGAAGACAGTGAACTAGCAGATGTGGCTGCCGTTAGTGCAGGAAACAA
CTATGAAGTAGGCAATATGATTGCTGAAGCTATGGGCAAGGTGGGAAGAA
AAGGCATAGTGACTCTTGAGGAAGGCAGCGGTTCCGAAAACAGCATGTAT
GTTGTGGAAGGGATGCAATTTGACCGTGGTTATATCTCTCCTTACTTTGT
TACAGACAGTGAGAAAATGGCTGTTGAATATGAAAATTGTAAGTTACTAC
TTGTTGACAAAAAGATAACAAATGCAAGAGATCTCATCCACGTTTTGGAA
GATGCTATTAAAGAGGGTTACCCAATTGTAATAATTGCAGAAGATATCGA
GCAGGAAGCTCTTGCTACTCTTGTTGTGAACAAGCTCAGAGGGTCATTAA
AGATTGCTGCACTGAAAGCCCCTGGTTTTGGAGAGCGCAAAAGTCAATAT
CTTGACGATATTGCTATACTCACTGGAGGTACTGTAATAAGAGATGAGGT
TGGTTTGTCATTGGACAAAGCTGAGAAGGAGGTCCTGGGGCAAGCTGCGA
AAGTGGTGCTCACTAAGGAGACAACTACAATTGTTGGTGATGGAAGCACA
CAGGAAGCAGTAAATAAGAGAGTTGCCCAAATCAAGAACCTTGTTGAGGC
AGCAGAGCAGGACTATGAAAAAGAAAAGCTCAATGAAAGAATTGCAAAAC
TCTCAGGCGGTGTTGCTGTTATTCAGGTTGGTGCACAAACAGAAACAGAA
CTTAAAGAAAAGAAATTGAGAGTGGAAGATGCTCTTAATGCAACAAAGGC
ATCTGTTGAAGAAGGGATTGTAGTTGGTGGAGGCTGCACCTTATTGAGGC
TTGCAGCTAAAGTTGATGCTGTAAGAGAGACTCTTGACAATGATGAACAG
AAGGTTGGAGCAGATATTGTTAAAAGGGCACTGAGCTATCCAATGAAGTT
AATTGCCAAGAATGCTGGGGTCAATGGGAGTGTTGTCATTGAAAAGGTGC
TGTCTAGTGACAATCCCAACTATGGTTATAATGCTGCAACTGGAAAATAT
GAGGATCTGATGGCAGCTGGTATTATTGATCCTACGAAAGTGGTAAGATG
TTGCTTGGAGCATGCAGCTTCTGTTGCAAGAACATTCCTCACATCAGATG
CTGTGGTTGTTGACATCAAGGAACCTGAACCTGCGGCTGCTGGGAACCCT
ATGGATAACTCAGGTTATGGGTACTAA
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protein sequence of Tc06v2_p007910.1

>Tc06v2_p007910.1 ID=Tc06v2_p007910.1|Name=Tc06v2_p007910.1|organism=Theobroma cacao|type=polypeptide|length=609bp
MTSSFNALLYSSPAFPCSRTMDKKFLSSSGRLSSFDSISSSAIVGRKQNV
ILRRGHSSKIWAMAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRN
VVLESKFGSPKIVNDGVTVAKEVELEHPVENIGARLVRQAASKTNDLAGD
GTTTSVVLAQGLITEGVKVVAAGANPVQITKGIESTTKALVSELKMMSKE
VEDSELADVAAVSAGNNYEVGNMIAEAMGKVGRKGIVTLEEGSGSENSMY
VVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIHVLE
DAIKEGYPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQY
LDDIAILTGGTVIRDEVGLSLDKAEKEVLGQAAKVVLTKETTTIVGDGST
QEAVNKRVAQIKNLVEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETE
LKEKKLRVEDALNATKASVEEGIVVGGGCTLLRLAAKVDAVRETLDNDEQ
KVGADIVKRALSYPMKLIAKNAGVNGSVVIEKVLSSDNPNYGYNAATGKY
EDLMAAGIIDPTKVVRCCLEHAASVARTFLTSDAVVVDIKEPEPAAAGNP
MDNSGYGY*
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