Tc06v2_t004520.3

Overview
NameTc06v2_t004520.3
Unique NameTc06v2_t004520.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1194
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productlong chain base biosynthesis protein 1, transcript variant X3
NoteLong chain base biosynthesis protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595588
GenbankXM_018123750.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g004520Tc06v2_g004520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p004520.3Tc06v2_p004520.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto321007auto321007Theobroma cacaoexon
exon-auto321008auto321008Theobroma cacaoexon
exon-auto321009auto321009Theobroma cacaoexon
exon-auto321010auto321010Theobroma cacaoexon
exon-auto321011auto321011Theobroma cacaoexon
exon-auto321012auto321012Theobroma cacaoexon
exon-auto321013auto321013Theobroma cacaoexon
exon-auto321014auto321014Theobroma cacaoexon
exon-auto321015auto321015Theobroma cacaoexon
exon-auto321016auto321016Theobroma cacaoexon
exon-auto321017auto321017Theobroma cacaoexon
exon-auto321018auto321018Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto321019auto321019Theobroma cacaoCDS
CDS-auto321020auto321020Theobroma cacaoCDS
CDS-auto321021auto321021Theobroma cacaoCDS
CDS-auto321022auto321022Theobroma cacaoCDS
CDS-auto321023auto321023Theobroma cacaoCDS
CDS-auto321024auto321024Theobroma cacaoCDS
CDS-auto321025auto321025Theobroma cacaoCDS
CDS-auto321026auto321026Theobroma cacaoCDS
CDS-auto321027auto321027Theobroma cacaoCDS
CDS-auto321028auto321028Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t004520.3 ID=Tc06v2_t004520.3|Name=Tc06v2_t004520.3|organism=Theobroma cacao|type=mRNA|length=1194bp
ATGCAGAGTGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCTCATACGAT
AATCAATGGCAAAGAAGTTGTGAACTTTGCTTCTGCAAATTATCTTGGAT
TTATAGGGCATGAAAAGTTACTTGAATCATGTACCTCTGCATTGGAGAAA
TATGGTGTTGGTTCTTGTGGTCCTCGTGGATTCTATGGAACAATTGATGT
CCACCTTGATTGCGAGGCCAGAATAGCAAAGTTTTTGGGAACGCCTGATT
CCATCCTCTATTCTTATGGGCTTTCCACCATGTTCAGTGCAATCCCTTGT
TTTTGTAAAAAGGGTGACATAATAGTTGTCGATGAGGGAGTACACTGGGG
TATACAAAATGGCCTCTACCTTTCTAGAAGCACCATTGTTTATTTCAAAC
ACAATGATATGGAATCTCTAGAAAAAACTCTTGAGAAAATTACCGCAGAG
AATCAGCGGGCTAAGAAATTGCGGCGCTACATTGTGGTTGAAGCTGTGTA
TCAGAATTCTGGTCAAATAGCTCCTTTGGACAAGATCATCAGGCTGAAAG
AGAAGTATCGCTTCCGTGTTTTATTGGATGAGAGTAATTCATTTGGTGTA
CTTGGCCGTACAGGAAGGGGTCTCACTGAATACTGTGGGGTTCCGATTGA
GAAGATAGACATTGTTACTGCTGCTATGGGGCATGCATTGGCGACAGAAG
GAGGATTCTGCACTGGAACTGCTAGAGTCATTGATCACCAACGGTTGAGC
AGTTCTGGGTATGTCTTCTCTGCATCTTTGCCCCCATATTTGGCTAGTGC
TGCGATTACTGCTATTGATGTATTAGAACAAAATCCTGAGTTGACATCAA
AGCTGAAGGAAAACGTTGCCATTTTATGGAAAGGCCTGTCAGATATCCTG
GGACTTTCGGTAGCAAGCAATCCAGAATCACCCATTGTTTTCCTTCGACT
TGAAAAATCAACAGGTTCGGTGAAAAGTGACCTCCAGCTGCTTGAAGAGA
TTGCCGATCGTGCCTTGAAAGAAGATTCTATATTTGTAGTGGTTTCAAAA
AGATCAACGCTCGATAAATGCCCCCTGCCTGTGGGAATTCGACTGTTTGT
TTCTGCCGCCCACATAGAATCTGACCTGCTCAAGGCATGTGCCTCATTGA
AGAGAGTTGCAGCTGAGGTGCTGAGCTTGCGGGATCGTAGATGA
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protein sequence of Tc06v2_p004520.3

>Tc06v2_p004520.3 ID=Tc06v2_p004520.3|Name=Tc06v2_p004520.3|organism=Theobroma cacao|type=polypeptide|length=398bp
MQSEPPVLESAAGPHTIINGKEVVNFASANYLGFIGHEKLLESCTSALEK
YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC
FCKKGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLEKTLEKITAE
NQRAKKLRRYIVVEAVYQNSGQIAPLDKIIRLKEKYRFRVLLDESNSFGV
LGRTGRGLTEYCGVPIEKIDIVTAAMGHALATEGGFCTGTARVIDHQRLS
SSGYVFSASLPPYLASAAITAIDVLEQNPELTSKLKENVAILWKGLSDIL
GLSVASNPESPIVFLRLEKSTGSVKSDLQLLEEIADRALKEDSIFVVVSK
RSTLDKCPLPVGIRLFVSAAHIESDLLKACASLKRVAAEVLSLRDRR*
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