Tc06v2_t003740.10

Overview
NameTc06v2_t003740.10
Unique NameTc06v2_t003740.10
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2076
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC18595483, transcript variant X11
NoteUncharacterized protein isoform 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595483
GenbankXM_018122518.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g003740Tc06v2_g003740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p003740.10Tc06v2_p003740.10Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto319244auto319244Theobroma cacaoexon
exon-auto319245auto319245Theobroma cacaoexon
exon-auto319246auto319246Theobroma cacaoexon
exon-auto319247auto319247Theobroma cacaoexon
exon-auto319248auto319248Theobroma cacaoexon
exon-auto319249auto319249Theobroma cacaoexon
exon-auto319250auto319250Theobroma cacaoexon
exon-auto319251auto319251Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto319252auto319252Theobroma cacaoCDS
CDS-auto319253auto319253Theobroma cacaoCDS
CDS-auto319254auto319254Theobroma cacaoCDS
CDS-auto319255auto319255Theobroma cacaoCDS
CDS-auto319256auto319256Theobroma cacaoCDS
CDS-auto319257auto319257Theobroma cacaoCDS
CDS-auto319258auto319258Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t003740.10 ID=Tc06v2_t003740.10|Name=Tc06v2_t003740.10|organism=Theobroma cacao|type=mRNA|length=2076bp
ATGTCTTACCTAAATTCGAAACAGACTACAAATATGGGACATGGAAAGTC
GAACAATGTAGATAAGATACCCACCTTCAGTCCCCAATTACAAAACACTG
AAGAAATTGGATTCCAAAGTTTGAGTAATGAAGCGGTCTGCTTTGCTGGG
CTAACTGGTGTTGAAACTGTTGATGCACCCTTAAATGAGTTATCACACTT
TCCTTCTTCTCATTTGGGAGACATGTCATTAAAGGGTATTGATTGGATGA
TTCATGGCTCCCAACTTGACAGCTATCAAAATTTCATGGTTCACCCTCAT
GTTATGAACGGGACTGGATATGTGCCTTCCCAATATTCAACTCTTGAAAA
TATAGCCTCTAATACTGGAGGTTTACAAATGGGCATGCAAGGTGCCAAAG
TGTACAATAGTAAGCCCCAATCAATTGGAAACTTCATGAGCTGTGGAAGC
AGGGCACCTTTGTTATGTGGTGCTCAAGATGGTAGGGAAATGGGGAGTAA
TAACAATTTGGTGGACTGTGTGGTTCAATCTGATTACCCAGAAACACTAG
ATGGGAGTTTTCTGACTCTAGGAGTTGGAGTTAATACAGAGTCCAGGTCA
AAAGCTAATGCTTTGAGCAGAGATTTCATTGGTAAAATAGATGGGGCTAT
AAAAATGCAGTTAAATCCATCCCATGTGCAAAGTGGTTATGAAAGTTCAT
TCTCTCCTGATTTTAGAATGGCAGTTGCTCTATCTGATAATCAAACCTAT
GCTGGTGGATTTTCTAGCATAGAAGAGAACGCAGTTGGATTATCCTCTCT
AAAGCATAATTTAGATGGACTTCACAGCATAGTGCAGAATGCAGGTGAAT
CATCCAATGTGAGTGCATTTGCTGGTACAGTGCAGAATGCAGGTGAATCA
TCTAATGTGAGTGCATTTGCTGGTCCAGTGCAGAATGTAGACAGTTGCTC
CCTTTCGGAATATCATCTTGGAGTTTCTGATAGTACTAGCTCCAACTTTA
GTTTAAGTACATCGCAAATGTTACCAATGCCCCAAAGCCACGTTTCACAT
CCTCTTCTTACACCAGATGATCAGAAATTTTGTACTGGATTTGCAAATAT
TGATCCATTTCATGGTCTTTCTGGTGTATCTCCAAACATAGTGCATATTA
GCAGCCAATCTGGACTGCCTCCTAATCAAAGCTTTCTTGGTCTTCCTGGT
GGATCTCCAATAGTGCATGGTAGTAGCCAATTTGGACTGCCTCCTAATGA
AGGGTTTCATAGTCTTTGTTGTGAATCACAAATAGTGCATAGTAGCAGGC
AATCTGGACTGCCTGTTCAAGCACAGCACAGAATGGCTCCCTGGCCTTCA
TTGTCTTCTTACATGACAAGCAAATATGCTACATTGGCCTCTGATCAGCT
ACAAAAATGCAATATGGGAAGTATACCTTGCTTCCAGTGGGGTACATCTG
TGGCTTCTCCTGTTCTTGGAAACATTGAAAGCACCAGCAACCAGTATCAG
TCAGCTGTATGGCAACATTATCCAGCTCACCACGGTGGTGCTAATCAAAC
TGTGGAAAATGCCCCATTTTCAAAGAGGATAGAAGATTGTCTGACTCAAA
TAAAATTTTTCCCTTTTGGGACTGCTGCTTTCACGAGGTCAAATCATGTT
GATCAGCTTTTTGCCTGTGATGGAGGTGCTTCTCAAGTTTCCACCACCAT
TCCATTTTCCAAGAATTCTGATAAGCTTTCTGCTAGTGATGGAACTGCTG
CTGAAGTTGTTAGCATTACTCCATCTTTTAAGAATATTGGGGTTCAACCA
TCAAGTACAGGTCAAGTAATTTCATTTTCAAGGGAAAGTGGACCTGCTAA
CCTTCTTGCTGGACCATCTCGCAAGAGGAAAGCAGCCCAATCCCCTCCAG
CTACTCCTCAGGTTCAAATAAAGAAGACTAGATCAGCAAAGCCTTCCATT
CGTTCATCTACCTTATACAGGGCCCGAGATGCTCCTTTTGTTTCTCCTCT
CCCACCAGTAGTATCCCAAGGTCACTCCTGCTTATGCGCCACTGACACGG
ACTGCTCCTGTCCCTCCCTCAGCTAG
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protein sequence of Tc06v2_p003740.10

>Tc06v2_p003740.10 ID=Tc06v2_p003740.10|Name=Tc06v2_p003740.10|organism=Theobroma cacao|type=polypeptide|length=692bp
MSYLNSKQTTNMGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFAG
LTGVETVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPH
VMNGTGYVPSQYSTLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGS
RAPLLCGAQDGREMGSNNNLVDCVVQSDYPETLDGSFLTLGVGVNTESRS
KANALSRDFIGKIDGAIKMQLNPSHVQSGYESSFSPDFRMAVALSDNQTY
AGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNVSAFAGTVQNAGES
SNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSTSQMLPMPQSHVSH
PLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPG
GSPIVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPS
LSSYMTSKYATLASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQ
SAVWQHYPAHHGGANQTVENAPFSKRIEDCLTQIKFFPFGTAAFTRSNHV
DQLFACDGGASQVSTTIPFSKNSDKLSASDGTAAEVVSITPSFKNIGVQP
SSTGQVISFSRESGPANLLAGPSRKRKAAQSPPATPQVQIKKTRSAKPSI
RSSTLYRARDAPFVSPLPPVVSQGHSCLCATDTDCSCPSLS*
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