Tc06v2_t003720.1

Overview
NameTc06v2_t003720.1
Unique NameTc06v2_t003720.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length669
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productphosphatidylinositol-glycan biosynthesis class F protein, transcript variant X2
NoteEndoplasmic reticulum membrane, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595479
GenbankXM_018123955.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g003720Tc06v2_g003720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p003720.1Tc06v2_p003720.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto319070auto319070Theobroma cacaoexon
exon-auto319071auto319071Theobroma cacaoexon
exon-auto319072auto319072Theobroma cacaoexon
exon-auto319073auto319073Theobroma cacaoexon
exon-auto319074auto319074Theobroma cacaoexon
exon-auto319075auto319075Theobroma cacaoexon
exon-auto319076auto319076Theobroma cacaoexon
exon-auto319077auto319077Theobroma cacaoexon
exon-auto319078auto319078Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto319079auto319079Theobroma cacaoCDS
CDS-auto319080auto319080Theobroma cacaoCDS
CDS-auto319081auto319081Theobroma cacaoCDS
CDS-auto319082auto319082Theobroma cacaoCDS
CDS-auto319083auto319083Theobroma cacaoCDS
CDS-auto319084auto319084Theobroma cacaoCDS
CDS-auto319085auto319085Theobroma cacaoCDS
CDS-auto319086auto319086Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t003720.1 ID=Tc06v2_t003720.1|Name=Tc06v2_t003720.1|organism=Theobroma cacao|type=mRNA|length=669bp
ATGAAGGAGAAGGAGGAGAATTCCCTATCAAGAATATCATCTTCCCAAGT
ATTTTTGACTCATCTTTGCTGCGGATTGGCCTTGGCTGTTGGATTTTGGG
TGGCTTACAATGTCTACTCCATCAATCTCGTCTCTGATCCCACCAACACC
CTCCATTTGATCTGGGCTATTGAATGTCCAGTTGTGATCCTTCTTTTCAG
TTGCTTTAGAAAGAAACCAGAGAAATGCTCGTATTTGAAAGCTGTTGCCC
GAGGCCTAGTGGGACTTCCTGCCGGGGCTCTAGTAAATGCGCTTGGAGCA
TTAGCTTTGGGTTCACCCGTTGGCTTGCAATACTTTGAAAAGACCGTTAT
CTGGTCTCTTCTGATGTCTTTATTCATTTTTGTGCCTGCAAGTTCTGTTT
ATGGTTCATCATGGACAGATTGGCATCGCATATTTGCATGTACTAAGCCA
AAGGGATCTTTAGATTTTATGCTTTGTCTACCAGCGCATGGAGCTGTGAT
TGGAGCTTGGTTTGGTGCTTGGCCTATGCCACTTGATTGGGAAAGGCCTT
GGCAGGATTGGCCAATCTGTGTGAGTTATGGAGCCATGGCTGGTTATGTA
GTTGGTATGGTGGGATCCTTTGGTCTTGCACTCATGCGAGGTGGACAAAA
GCAAATCAAAGCAGAGTAG
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protein sequence of Tc06v2_p003720.1

>Tc06v2_p003720.1 ID=Tc06v2_p003720.1|Name=Tc06v2_p003720.1|organism=Theobroma cacao|type=polypeptide|length=223bp
MKEKEENSLSRISSSQVFLTHLCCGLALAVGFWVAYNVYSINLVSDPTNT
LHLIWAIECPVVILLFSCFRKKPEKCSYLKAVARGLVGLPAGALVNALGA
LALGSPVGLQYFEKTVIWSLLMSLFIFVPASSVYGSSWTDWHRIFACTKP
KGSLDFMLCLPAHGAVIGAWFGAWPMPLDWERPWQDWPICVSYGAMAGYV
VGMVGSFGLALMRGGQKQIKAE*
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