Tc06v2_t002870.1

Overview
NameTc06v2_t002870.1
Unique NameTc06v2_t002870.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1221
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product3-isopropylmalate dehydrogenase, chloroplastic
Note3-isopropylmalate dehydrogenase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595372
GenbankXM_007023288.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g002870Tc06v2_g002870Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p002870.1Tc06v2_p002870.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto317342auto317342Theobroma cacaoexon
exon-auto317343auto317343Theobroma cacaoexon
exon-auto317344auto317344Theobroma cacaoexon
exon-auto317345auto317345Theobroma cacaoexon
exon-auto317346auto317346Theobroma cacaoexon
exon-auto317347auto317347Theobroma cacaoexon
exon-auto317348auto317348Theobroma cacaoexon
exon-auto317349auto317349Theobroma cacaoexon
exon-auto317350auto317350Theobroma cacaoexon
exon-auto317351auto317351Theobroma cacaoexon
exon-auto317352auto317352Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto317353auto317353Theobroma cacaoCDS
CDS-auto317354auto317354Theobroma cacaoCDS
CDS-auto317355auto317355Theobroma cacaoCDS
CDS-auto317356auto317356Theobroma cacaoCDS
CDS-auto317357auto317357Theobroma cacaoCDS
CDS-auto317358auto317358Theobroma cacaoCDS
CDS-auto317359auto317359Theobroma cacaoCDS
CDS-auto317360auto317360Theobroma cacaoCDS
CDS-auto317361auto317361Theobroma cacaoCDS
CDS-auto317362auto317362Theobroma cacaoCDS
CDS-auto317363auto317363Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t002870.1 ID=Tc06v2_t002870.1|Name=Tc06v2_t002870.1|organism=Theobroma cacao|type=mRNA|length=1221bp
ATGGCGGCTTCTATTCAGCTTAATGTCCGGTCCATCAAAGCTCCGTTCAA
CCTAACACCCGTTCCCAAACAGTGCCCGAAACCGAGCAGGATCAGTTGCG
CCGCCGCAGCCGCCACACCAACCAAACGCTACAGCATCACTCTCCTTCCC
GGCGATGGCATCGGCCCTGAAATCATCTTCGTTACCAAAAATGTCCTCAA
ACTCGCTGGCTCTCTCGAAGGGATTGAATTTAGCTTCCAAGAGATGCCCA
TGGGTGGAGCTGCTTTGGATTTGACTGGTGTTCCGCTGCCAGAGGAAACC
CTTTCAGCAGCAAAAAAGGCTGATGCCATTCTCCTGGGAGCCATTGGAGG
GTATAAGTGGGATAAAAATGAAAAACACTTGAAGCCTGAGACTGGTCTTC
TTCAGCTTCGAGAAGGGCTTAAAGTCTTTGCAAATTTGAGACCAGCTACT
GTTTTACCACAGTTAGTGGACTCTTCAACTTTGAAGAAAGATGTTGCTGA
AGGTGTTGACTTAATGGTTGTAAGGGAGCTTACTGGAGGTATTTATTTTG
GAAAACCAAGGGGATTTGGTATTAATGAAAAGGGTGAGGATATTGGCTTC
AATACTGAGGTGTATGCTACTCATGAGATTGATCGTATTGCTCGTGTTGC
GTTTGAGATTGCTCGGAAGCGGCGTGGACAACTCTGTTCTGTTGACAAAG
CTAATGTTTTGGAGGCATCAATGTTATGGAGGAAAAGAGTTACAGCGATA
GCTTCTGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGACAATGC
AGCAATGCAGCTTGTTCGTTACCCAAAACAGTTCGACACAATTGTGACCA
ACAACATATTCGGTGATATTTTGTCCGATGAGGCGTCAATGATCACTGGA
AGCATTGGGATGCTTCCATCTGCTAGTCTTGGTGAATCAGGACCTGGACT
TTTTGAACCTATACATGGTTCTGCTCCTGATATCGCTGGACAGGACAAGG
CGAACCCACTTGCAACAATTCTTAGTGCTGCAATGCTTTTGAAGTATGGC
CTAGGGGAAGAGAATGCTGCAAAGAGAATTGAGAATGCAGTTCTGGATAC
TCTTAATAGGGGTTTCCGGACAGGCGATATATATTCAGCTGGAAATAAAC
TAGTGGGCTGCAAGGAGATGGGTGAGGAGGTGCTCAAATCAGTTGACTCC
CCAGTTCTTGCTGCCATCTGA
back to top

protein sequence of Tc06v2_p002870.1

>Tc06v2_p002870.1 ID=Tc06v2_p002870.1|Name=Tc06v2_p002870.1|organism=Theobroma cacao|type=polypeptide|length=407bp
MAASIQLNVRSIKAPFNLTPVPKQCPKPSRISCAAAAATPTKRYSITLLP
GDGIGPEIIFVTKNVLKLAGSLEGIEFSFQEMPMGGAALDLTGVPLPEET
LSAAKKADAILLGAIGGYKWDKNEKHLKPETGLLQLREGLKVFANLRPAT
VLPQLVDSSTLKKDVAEGVDLMVVRELTGGIYFGKPRGFGINEKGEDIGF
NTEVYATHEIDRIARVAFEIARKRRGQLCSVDKANVLEASMLWRKRVTAI
ASEYPDVELSHMYVDNAAMQLVRYPKQFDTIVTNNIFGDILSDEASMITG
SIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYG
LGEENAAKRIENAVLDTLNRGFRTGDIYSAGNKLVGCKEMGEEVLKSVDS
PVLAAI*
back to top