Tc06v2_t002280.2

Overview
NameTc06v2_t002280.2
Unique NameTc06v2_t002280.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1236
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productalpha-galactosidase 2, transcript variant X1
NoteAlpha-galactosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595303
GenbankXM_018123554.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g002280Tc06v2_g002280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p002280.2Tc06v2_p002280.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto316106auto316106Theobroma cacaoexon
exon-auto316107auto316107Theobroma cacaoexon
exon-auto316108auto316108Theobroma cacaoexon
exon-auto316109auto316109Theobroma cacaoexon
exon-auto316110auto316110Theobroma cacaoexon
exon-auto316111auto316111Theobroma cacaoexon
exon-auto316112auto316112Theobroma cacaoexon
exon-auto316113auto316113Theobroma cacaoexon
exon-auto316114auto316114Theobroma cacaoexon
exon-auto316115auto316115Theobroma cacaoexon
exon-auto316116auto316116Theobroma cacaoexon
exon-auto316117auto316117Theobroma cacaoexon
exon-auto316118auto316118Theobroma cacaoexon
exon-auto316119auto316119Theobroma cacaoexon
exon-auto316120auto316120Theobroma cacaoexon
exon-auto316121auto316121Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto316122auto316122Theobroma cacaoCDS
CDS-auto316123auto316123Theobroma cacaoCDS
CDS-auto316124auto316124Theobroma cacaoCDS
CDS-auto316125auto316125Theobroma cacaoCDS
CDS-auto316126auto316126Theobroma cacaoCDS
CDS-auto316127auto316127Theobroma cacaoCDS
CDS-auto316128auto316128Theobroma cacaoCDS
CDS-auto316129auto316129Theobroma cacaoCDS
CDS-auto316130auto316130Theobroma cacaoCDS
CDS-auto316131auto316131Theobroma cacaoCDS
CDS-auto316132auto316132Theobroma cacaoCDS
CDS-auto316133auto316133Theobroma cacaoCDS
CDS-auto316134auto316134Theobroma cacaoCDS
CDS-auto316135auto316135Theobroma cacaoCDS
CDS-auto316136auto316136Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t002280.2 ID=Tc06v2_t002280.2|Name=Tc06v2_t002280.2|organism=Theobroma cacao|type=mRNA|length=1236bp
ATGGCACATTCATTACCATCAAGTCGTTTTTCAGCTTTTTTTTGTTGTAT
TCTTCTACTGTTGCTGATCAGCTCTGCTACTGTGAGTGGGGCTCGACTAG
GGAATGCCAGGCTAACAGATTCTTCTAGTATCAGAAGGATACTTTTAAAC
AATGGCCTTGGTCTAACTCCACAAATGGGTTGGAATAGTTGGAACCGTTT
TCATTGCAATATCAACGAGACATTGATCAAGGAAACTGCGGATGCAATGG
TGTCAAGTGGTCTTGCTGCTTTAGGATACACCTATATCAATTTAGATGAC
TGTTGGGGTGAACTCAACAGAGATACTCAGGGGAATTTGGTTCCTAAAGC
ATCAACATTTCCTTCAGGCATTAAGGCTCTGGCAGATTATGTACATAGCA
AAGGGCTTAAGCTTGGAATTTATGCAGATGCAGGGACTCAAACTTGTAGC
AAGACCATGCCCGGGTCCCTAGGATACGAAGAACAAGATGCAAAAACGTT
TGCTTCATGGGGGGTTGATTACCTGAAATATGACAATTGTGCAAATACTG
GCATAAGCCCAAAGGAAAGGTATCCGAAGATGAGCAAAGCTTTACTAAGT
TCAGGGAGGACCATGTTTTTCTCGTTATGTGAATGGGGAAATGAAGATCC
AGCAACTTGGGCACCAAGCATTGGGAATAGTTGGAGAACAACTGGAGATA
TTAAAGATAACTGGGATAGAATGACATCCATTGCAGATCAAAATGACAAA
TGGGCATCTTATGCTCAACCTGGCAGTTGGAATGATCCAGACATGCTTGA
GGTAGGAAATGGTGGCATGACAACAGAAGAATATCGCAGTCATTTTAGCA
TATGGTCATTAGCTAAAGCTCCTCTATTGATTGGCTGTGATATTCGGTCA
ATGGATAATGTCACCTTTGAACTGCTAAGCAATAAGGAGGTTATTGCAGT
CAATCAAGATAAACTTGGAGTTCAGGGGAAAAAGGTGAAAAAAGATGGGG
ATCTTGAGGTATGGGCTGGCCCCTTGACTGATAACAGGGTGGCTGTAGTC
TTATGGAACAGAGGATCTTCCTCTGCAAACATCACTGCTTACTGGTCTGA
TATAGGCCTTAAACCATCAACTGTTTGTGATGTTCAACATTTATGGGCGC
ATTCAACGGAGTTATCAGTCCAAGATCAGCTCTCTGCTCAAGTGGATGCA
CATGCTTGCAGAATGTACACAATCACACCACAGTGA
back to top

protein sequence of Tc06v2_p002280.2

>Tc06v2_p002280.2 ID=Tc06v2_p002280.2|Name=Tc06v2_p002280.2|organism=Theobroma cacao|type=polypeptide|length=412bp
MAHSLPSSRFSAFFCCILLLLLISSATVSGARLGNARLTDSSSIRRILLN
NGLGLTPQMGWNSWNRFHCNINETLIKETADAMVSSGLAALGYTYINLDD
CWGELNRDTQGNLVPKASTFPSGIKALADYVHSKGLKLGIYADAGTQTCS
KTMPGSLGYEEQDAKTFASWGVDYLKYDNCANTGISPKERYPKMSKALLS
SGRTMFFSLCEWGNEDPATWAPSIGNSWRTTGDIKDNWDRMTSIADQNDK
WASYAQPGSWNDPDMLEVGNGGMTTEEYRSHFSIWSLAKAPLLIGCDIRS
MDNVTFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLTDNRVAVV
LWNRGSSSANITAYWSDIGLKPSTVCDVQHLWAHSTELSVQDQLSAQVDA
HACRMYTITPQ*
back to top