Tc06v2_t002280.1

Overview
NameTc06v2_t002280.1
Unique NameTc06v2_t002280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1236
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productalpha-galactosidase 2, transcript variant X2
NoteAlpha-galactosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595303
GenbankXM_018123555.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g002280Tc06v2_g002280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p002280.1Tc06v2_p002280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto316073auto316073Theobroma cacaoexon
exon-auto316074auto316074Theobroma cacaoexon
exon-auto316075auto316075Theobroma cacaoexon
exon-auto316076auto316076Theobroma cacaoexon
exon-auto316077auto316077Theobroma cacaoexon
exon-auto316078auto316078Theobroma cacaoexon
exon-auto316079auto316079Theobroma cacaoexon
exon-auto316080auto316080Theobroma cacaoexon
exon-auto316081auto316081Theobroma cacaoexon
exon-auto316082auto316082Theobroma cacaoexon
exon-auto316083auto316083Theobroma cacaoexon
exon-auto316084auto316084Theobroma cacaoexon
exon-auto316085auto316085Theobroma cacaoexon
exon-auto316086auto316086Theobroma cacaoexon
exon-auto316087auto316087Theobroma cacaoexon
exon-auto316088auto316088Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto316089auto316089Theobroma cacaoCDS
CDS-auto316090auto316090Theobroma cacaoCDS
CDS-auto316091auto316091Theobroma cacaoCDS
CDS-auto316092auto316092Theobroma cacaoCDS
CDS-auto316093auto316093Theobroma cacaoCDS
CDS-auto316094auto316094Theobroma cacaoCDS
CDS-auto316095auto316095Theobroma cacaoCDS
CDS-auto316096auto316096Theobroma cacaoCDS
CDS-auto316097auto316097Theobroma cacaoCDS
CDS-auto316098auto316098Theobroma cacaoCDS
CDS-auto316099auto316099Theobroma cacaoCDS
CDS-auto316100auto316100Theobroma cacaoCDS
CDS-auto316101auto316101Theobroma cacaoCDS
CDS-auto316102auto316102Theobroma cacaoCDS
CDS-auto316103auto316103Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t002280.1 ID=Tc06v2_t002280.1|Name=Tc06v2_t002280.1|organism=Theobroma cacao|type=mRNA|length=1236bp
ATGGCACATTCATTACCATCAAGTCGTTTTTCAGCTTTTTTTTGTTGTAT
TCTTCTACTGTTGCTGATCAGCTCTGCTACTGTGAGTGGGGCTCGACTAG
GGAATGCCAGGCTAACAGATTCTTCTAGTATCAGAAGGATACTTTTAAAC
AATGGCCTTGGTCTAACTCCACAAATGGGTTGGAATAGTTGGAACCGTTT
TCATTGCAATATCAACGAGACATTGATCAAGGAAACTGCGGATGCAATGG
TGTCAAGTGGTCTTGCTGCTTTAGGATACACCTATATCAATTTAGATGAC
TGTTGGGGTGAACTCAACAGAGATACTCAGGGGAATTTGGTTCCTAAAGC
ATCAACATTTCCTTCAGGCATTAAGGCTCTGGCAGATTATGTACATAGCA
AAGGGCTTAAGCTTGGAATTTATGCAGATGCAGGGACTCAAACTTGTAGC
AAGACCATGCCCGGGTCCCTAGGATACGAAGAACAAGATGCAAAAACGTT
TGCTTCATGGGGGGTTGATTACCTGAAATATGACAATTGTGCAAATACTG
GCATAAGCCCAAAGGAAAGGTATCCGAAGATGAGCAAAGCTTTACTAAGT
TCAGGGAGGACCATGTTTTTCTCGTTATGTGAATGGGGAAATGAAGATCC
AGCAACTTGGGCACCAAGCATTGGGAATAGTTGGAGAACAACTGGAGATA
TTAAAGATAACTGGGATAGAATGACATCCATTGCAGATCAAAATGACAAA
TGGGCATCTTATGCTCAACCTGGCAGTTGGAATGATCCAGACATGCTTGA
GGTAGGAAATGGTGGCATGACAACAGAAGAATATCGCAGTCATTTTAGCA
TATGGTCATTAGCTAAAGCTCCTCTATTGATTGGCTGTGATATTCGGTCA
ATGGATAATGTCACCTTTGAACTGCTAAGCAATAAGGAGGTTATTGCAGT
CAATCAAGATAAACTTGGAGTTCAGGGGAAAAAGGTGAAAAAAGATGGGG
ATCTTGAGGTATGGGCTGGCCCCTTGACTGATAACAGGGTGGCTGTAGTC
TTATGGAACAGAGGATCTTCCTCTGCAAACATCACTGCTTACTGGTCTGA
TATAGGCCTTAAACCATCAACTGTTTGTGATGTTCAACATTTATGGGCGC
ATTCAACGGAGTTATCAGTCCAAGATCAGCTCTCTGCTCAAGTGGATGCA
CATGCTTGCAGAATGTACACAATCACACCACAGTGA
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protein sequence of Tc06v2_p002280.1

>Tc06v2_p002280.1 ID=Tc06v2_p002280.1|Name=Tc06v2_p002280.1|organism=Theobroma cacao|type=polypeptide|length=412bp
MAHSLPSSRFSAFFCCILLLLLISSATVSGARLGNARLTDSSSIRRILLN
NGLGLTPQMGWNSWNRFHCNINETLIKETADAMVSSGLAALGYTYINLDD
CWGELNRDTQGNLVPKASTFPSGIKALADYVHSKGLKLGIYADAGTQTCS
KTMPGSLGYEEQDAKTFASWGVDYLKYDNCANTGISPKERYPKMSKALLS
SGRTMFFSLCEWGNEDPATWAPSIGNSWRTTGDIKDNWDRMTSIADQNDK
WASYAQPGSWNDPDMLEVGNGGMTTEEYRSHFSIWSLAKAPLLIGCDIRS
MDNVTFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLTDNRVAVV
LWNRGSSSANITAYWSDIGLKPSTVCDVQHLWAHSTELSVQDQLSAQVDA
HACRMYTITPQ*
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