Tc06v2_t002010.3

Overview
NameTc06v2_t002010.3
Unique NameTc06v2_t002010.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2787
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productprobable disease resistance protein At5g63020, transcript variant X2
NotePutative Probable disease resistance protein At5g63020
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595263
GenbankXM_018122672.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g002010Tc06v2_g002010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p002010.3Tc06v2_p002010.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto315522auto315522Theobroma cacaoexon
exon-auto315523auto315523Theobroma cacaoexon
exon-auto315524auto315524Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto315525auto315525Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t002010.3 ID=Tc06v2_t002010.3|Name=Tc06v2_t002010.3|organism=Theobroma cacao|type=mRNA|length=2787bp
ATGGGCAATTTGTGCTCAATCCAAATCTCAACAGATGACACAGTCTCTCG
TTGTTGGGATTGCATAGTTGGACGAGCGAATTACACTTGTAAGCTAGACA
AAAACCTTAGAGCTCTACGTGTTGCAGTGGAGGAATTGAAAGCACTAAGA
GATGACGTGAATCGGAGGGTTCATTGTGCTGAACAACAACTCATGATCAA
GCGGCTTAGCCAAGTTCAAGTTTGGCTTTCAAGAGCGGAAACTATGATAA
TGGAAGCTGAGGAATTGATAAGAGATGCCTCTACAGAAAAGGAGAAACTA
TGTCTCGCAGGCTGCTTCTCCAAGAATTGCAAATCTGGCTACAAGTTTGG
TCGACAAGTGGCTAAGAAACTTAAACAAGTAGTTGCTCTAAAGAGTAAAG
GAGTTTTTGACAAGGTAGCTGAGAACGAACCTACAGGTCCAGTGGATGTG
AGACCGATTGAGCCCACCGTGGGCTTGGAATCAACATTGGCTAAGGTCTG
GAGCTTGCTTCAAGACAAACAAGTTGGAATGATTGGTTTATACGGATTGG
GAGGAGTTGGGAAGACAACACTCTTGACCCAAATTAACAACAAGTTGAGT
GGTAATTCCTTAGATTTTGATGTTGTAATTTGGGTGGTGGTGTCTAAAGA
TCACACGGTCGAAAACGTTCAAGAAAAGATTGGGAAAAGGGTAGGCCTTT
TTAATGGGTGGATGCAGAATAAAAGTTCTGATGAGAAAGCTGTAGACATC
TTCAGGATTTTGAGTAAAAGAAAATTCGTTTTGTTCTTGGATGATGTATG
GGAACGGGTGCATTTAACCAAGATAGGGATACCTTTGCCGTGCCAGGAAA
ATGGTTCCAAGGTTGTTCTCACTACTCGTTTTCTAGAGATATGTAATGAA
ATGGAAGCTCAGAAAGTCAAGGTAGAGTGTTTGAGAGCAAATGAAGCTTG
GGAATTGTTTCGAGAGAAAGTTGGAGAAGAAACCCTTCATAGCCATCCAG
ATATTCCAGGGTTAGCCCAAAAGGTGGCTGAAAAGTGTAGTGGGTTGCCT
CTTGCACTAATTACTATTGGCCGAGCCATGGCCAGCAAGAAGACACCCCA
GGCATGGGAATACGCAGTTGAGGTCATGAAGAAATCTGCACATAAATTTG
CAAGAATGGGACAAGAGGTGTATCCTCTTTTAAAATTCAGTTATGATAGT
TTGCATTGTGACACGATGAGATCTTGCCTCTTGTACTGCGGTTTGTATCC
TGAAGATGTTCTTATTTTGAAATCTGAGCTGATAGAGTATTGGTTCTGTG
AGGGGCTCTTGGATGAATTTGACAGCGTAAGAAGAGCTCGATTGCAAGGA
TACAACATCATCGATTCTCTTGTTAATGCTTGTTTATTAGAAGAAGATGG
AGAATACTACGTGAAGATGCATGATGTGATTCGTGACATGACATTGTGGA
TAGCAGGCGAGTCTGAAGCACCTGAAAAGAGCTTTTTTGTACAAGCAGGG
CTCCAATTGAATGAAACACCAGATGTTGGAAAATGGGAAAATGTAAGAAG
ATTATCATTGACAGGCAATAAAATCAAAGATCTCACATCAACACCCACAT
GTCCTAATCTTGAAACTTTGTTACTTAACTATAATGAGTTGGAGGTGATC
AGTGATGGCTTCTTCAAATTGATGCCTAATCTCAGAGTTTTGAACTTGGC
AGGTAACCGGGGTCTGAGACAATTGCCAGAGGGAATTTCAGAATTGGTTT
CACTGGAATGTCTTAATCTATCACGGACAGGTTTAAGAGAGCTGTCAATT
AAGCTGAAGAGCCTGACGAAATTAAGATACCTGGACCTGAGATACACGGA
CGATCTTAGAAGAATTCCAGGGAAACTGTTATCTAGCTTCCCAAAGCTGC
AAATATTCAGAATGTTTCGGTCTGGTGGTGGTTATTCTCAAGAAGAAATG
GTTGAAGACAATGAGGATGGAATAGTGGAATTGGGGTGGTTGCCACATTT
GAATGGAGGGATTAATGATTTTCATAATCCATACGAAACAGATGGAGACA
ATCTCCTGAATGATGGTAATGAAGGTCTAATAGAGGAATTGGGGTGTTTG
CAATCTTTGAATACGCTGAGTATTCATATAATGAGTGCGTCTGCTCTTAA
AAGATTTTTGAGCTTCCACAACTTACAAGGCTGCACTCAAGAACTATCTC
TTTGTGTTTTTAAAGAGTCAAACTCATTAAATGTTTTAGCCTTAGCAAAT
ATGCAGTGTCTAGAGAGACTAGATATCAGTGAATGTGCAAGATTGGAAGA
GATGAAGATAGAGAAGGAAGGGGGAGGAAGAATGATACAAGCCTCACTGT
TTCCTACCCTTCGAGAGGTTACCATATTTGAGTGCGGCAATTTAAGGGAC
ATGACATGGATTATTCTTGTTCCAAATCTAAGATTTCTTTGGGTTGTTAG
TTGCCCAAAAATGGAAGAAATAATGAGCAAGGAAAAAATGAGTGAAGCTG
CAGATATGGTTAAAAGTTTGAATCCAAACCCATTTGCTCAACTACAAAAT
CTTACTTTACAATTTTTGCCAGAGTTGAAGAGTGTACACTGGGATGTGCT
ACCCTTCCCATGTTTGACAGAAATCTTTGTGAGGGAATGCCCCAAACTGA
GGGAGCTCCCTCTTAGCTCGGACAGTGCTAAGGGAAATCAAATCTGCATT
CAAGGAGAAAAGGAGTGGTGGGAAACACTAGAATGGAAGAATACAGCCAC
TCAGAATGCTTTTCTTCCTTTCTTCGAACCCCACTGA
back to top

protein sequence of Tc06v2_p002010.3

>Tc06v2_p002010.3 ID=Tc06v2_p002010.3|Name=Tc06v2_p002010.3|organism=Theobroma cacao|type=polypeptide|length=929bp
MGNLCSIQISTDDTVSRCWDCIVGRANYTCKLDKNLRALRVAVEELKALR
DDVNRRVHCAEQQLMIKRLSQVQVWLSRAETMIMEAEELIRDASTEKEKL
CLAGCFSKNCKSGYKFGRQVAKKLKQVVALKSKGVFDKVAENEPTGPVDV
RPIEPTVGLESTLAKVWSLLQDKQVGMIGLYGLGGVGKTTLLTQINNKLS
GNSLDFDVVIWVVVSKDHTVENVQEKIGKRVGLFNGWMQNKSSDEKAVDI
FRILSKRKFVLFLDDVWERVHLTKIGIPLPCQENGSKVVLTTRFLEICNE
MEAQKVKVECLRANEAWELFREKVGEETLHSHPDIPGLAQKVAEKCSGLP
LALITIGRAMASKKTPQAWEYAVEVMKKSAHKFARMGQEVYPLLKFSYDS
LHCDTMRSCLLYCGLYPEDVLILKSELIEYWFCEGLLDEFDSVRRARLQG
YNIIDSLVNACLLEEDGEYYVKMHDVIRDMTLWIAGESEAPEKSFFVQAG
LQLNETPDVGKWENVRRLSLTGNKIKDLTSTPTCPNLETLLLNYNELEVI
SDGFFKLMPNLRVLNLAGNRGLRQLPEGISELVSLECLNLSRTGLRELSI
KLKSLTKLRYLDLRYTDDLRRIPGKLLSSFPKLQIFRMFRSGGGYSQEEM
VEDNEDGIVELGWLPHLNGGINDFHNPYETDGDNLLNDGNEGLIEELGCL
QSLNTLSIHIMSASALKRFLSFHNLQGCTQELSLCVFKESNSLNVLALAN
MQCLERLDISECARLEEMKIEKEGGGRMIQASLFPTLREVTIFECGNLRD
MTWIILVPNLRFLWVVSCPKMEEIMSKEKMSEAADMVKSLNPNPFAQLQN
LTLQFLPELKSVHWDVLPFPCLTEIFVRECPKLRELPLSSDSAKGNQICI
QGEKEWWETLEWKNTATQNAFLPFFEPH*
back to top