Tc06v2_t001990.1

Overview
NameTc06v2_t001990.1
Unique NameTc06v2_t001990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2787
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productprobable disease resistance protein At1g12280
NotePutative Disease resistance protein RPS5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595262
GenbankXM_018122701.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g001990Tc06v2_g001990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p001990.1Tc06v2_p001990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto315498auto315498Theobroma cacaoexon
exon-auto315499auto315499Theobroma cacaoexon
exon-auto315500auto315500Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto315501auto315501Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t001990.1 ID=Tc06v2_t001990.1|Name=Tc06v2_t001990.1|organism=Theobroma cacao|type=mRNA|length=2787bp
ATGGGCAATTTGTGCTCAATCCAAATCTCAACAGATCACACAGTCTCTCG
TTGTTGGGATTGCATAGTTGGACGAGCGAATTACACTTGTAAGCTAGAGA
AAAACCTTAGAGCTCTGCGTGTTGCAGTGGAGGAATTGAAAGCACTAAGA
GATGACGTGAATCGGAGGGTTCATTGTGCTGAACAACAACTCATGATCAA
GCGGCTTAGCCAAGTTCAAGTTTGGCTTTCAAGAGCGGAAACTATGATAA
TGGAATCTGAGGAATTGATAAGAGATGCCTCTACAGAAAAGGAGAAACTA
TGTCTCGCAGGCTGCTTCTCCAAGAATTGCAAATCTAGCTACAAGTTTGG
TCGACAAGTGGCTAAGAAACTTAAACAAGTAGTTGAGCTAAAGAGTAAAG
GAGTTTTTGACAAGGTAGCTGAGAACGAACCTACAGGTCCAGTGGATGTG
AGACCGATTGAGCCCACCGTGGGCTTGGAATCAACATTGGCTAAGGTCTG
GAGCTTGCTCCAAGACAAACAAGTTGGAATGATTGGTTTATACGGATTGG
GAGGAGTTGGGAAGACAACACTCTTGACCCAAGTTAACAACAAGTTGAGT
GGTAATCCATTAGATTTTGATGTTGTAATTTGGGTGGTGGTGTCTAAAGA
TCACACGGTCGAAACCGTTCAAGAAAAGATTGGGAAAAGGGTAGGCCTTT
TTAATGGGTGGATGCAGAATAAAAGTTCTGATGAGAAAGCTGTAGACATC
TTCAGGATTTTGAGTAAAAGAAAATTCGTTTTGTTCTTGGATGATGTATG
GGAACGGGTGCATTTAACCAAGATAGGGATACCTTTGCCGAGCCAGGAAA
ATGGTTCCAAGGTTGTTTTCACTACTCGTTTTTTAGAGATATGTAACGAA
ATGGAAGCTCAGAAAGTCAAGGTAGAGTGTTTGAGAGCAAATGAAGCTTG
GGAATTGTTTCGAGAGAAAGTTGGAGAAGAAACCCTTCATAGCCATCCAG
ATATTCCAGGGTTAGCCCAAAAGATGGCTGCAAAGTGTGGTGGGTTGCCT
CTTTCACTAATTACTATTGGCCGAGCCATGGCCAGCAAGAAGACTCCCCA
AGCATGGGAATACGCAATTGAGGTCCTGAAGAAATCTGCACATAAATTGG
CAAGAATGGGACAAGAGGTGTATCCTGTTTTAAAATTCAGTTATGATAGT
TTGCATTGTGACACGATGAGATCTTGCCTCTTGTACTGTGGTTTGTATCC
TGAAGATGTTCTTATTTTGAAATCTGAGCTGATAGAGTATTGGTTCTGTG
AGGGGCTCTTGGATGAATTTGACAGCGTAAGAAGAGCTCGATTGCAAGGA
TACAACATCATCGATTCTCTTGTTAATTCTTGTTTATTAGAAGAAGATGG
AGAATACTACGTGAAGATGCATGATGTGATTCGTGACATGACATTGTGGA
TAGCAGGCGAGTCTGAAGCACCTGAAAAGAGCTTTTTTGTACAAGCAGGG
CTCCAATTGACTGAAACACCAGATGTTGGAAAATGGGAAAATGTAAGAAG
ATTATCATTGGCAGGCAATAAAATCAAAGATCTCACATCAACACCCACAT
GTCCTAATCTTGAAACTTTGTTACTTAACTATAATGAGTTGGAGGTGATC
AGTGATGGCTTCTTCAAATTGATGCCTAATCTCAGAGTTTTGAACTTGGC
AGGTAACCGGGGTCTGAGACAATTGCCAGAGGGAATTTCAGAATTGGTTT
CACTGGAATGTCTTAATCTATCACGGACAGGGTTAAGAGAGCTGTCAATT
AAGCTGAAGAGCCTGACGAAATTAAGATACCTGGACCTGAGATACACGGA
CGATCTTAGAAGAATTCCAGGGAAGCTGATATCTAGCTTCCCAAAGCTGC
AAATATTCAGAATGTTTCGGTCTGGTGGTGGTTATTCTCAAGAAGAAATG
GTTGCAGACAATGAAGATGGAATAGTGGAATTGGGGTGCTTGCCACATTT
GAATGGAGGGATTAATGATTTTCATAATCCATACGAAACAGAAGGAGACA
ATCTCCTGAATGATGGTAATGAAGGTCTAATAGAGGAATTGGGGTGTTTG
CAATCTTTGAATACGCTGAGTATTCATATAATGAGTGCTTCTGCTCTTGA
AAGATTTTTGAGCTTCCCCAACTTACCAGGCTGCACTCAAGAACTATCTC
TTTGTGCTTTTAAAGAGTCAAAGTCATTAAATGTTTTATCTTTAGCAAAT
ATGCAGTGTCTAGAGAGACTAGATATCAGTGAATGTGCAAGACTGGAAGA
GATGAAGATAGAGAAGGAAGGGGAAGGAAGAATGATACAAGCCTCACTGT
TTCGTACCCTTCGAGAGGTTACCATATTTGAGTGCGGCAATTTGAGGGAC
ATGACATGGATTATTCTTGTTCCAAATCTAAGATTTCTTTGGGTTGTTAA
TTGCCTAAAAATGGAAGAAATAATGAGCAAGGAAAAAATGAGTGAAGCTG
CAGATCTGGTTAGAAGTTTGAATCCAAACCCATTTGCTAAGCTACAAAAT
CTTACTTTACAATTTTTACCAGAGTTGAAGAGTATACACTGGGATGTGCT
ACCCTTCCCATGTTTGACAGAAATATTTGTGAGAGAATGCCCCAAACTGA
GGGAGCTCCCTCTTAGCTCGGACAGTGCTAAGGGAAATCCAATCTGCATT
CAAGGAGAAAAGGAGTGGTGGGAAACGCTAGAATGGAAGAATAAAGCCAC
TCAGAATGCTTTTCTGCCTTTCTTCGAACCCCACTGA
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protein sequence of Tc06v2_p001990.1

>Tc06v2_p001990.1 ID=Tc06v2_p001990.1|Name=Tc06v2_p001990.1|organism=Theobroma cacao|type=polypeptide|length=929bp
MGNLCSIQISTDHTVSRCWDCIVGRANYTCKLEKNLRALRVAVEELKALR
DDVNRRVHCAEQQLMIKRLSQVQVWLSRAETMIMESEELIRDASTEKEKL
CLAGCFSKNCKSSYKFGRQVAKKLKQVVELKSKGVFDKVAENEPTGPVDV
RPIEPTVGLESTLAKVWSLLQDKQVGMIGLYGLGGVGKTTLLTQVNNKLS
GNPLDFDVVIWVVVSKDHTVETVQEKIGKRVGLFNGWMQNKSSDEKAVDI
FRILSKRKFVLFLDDVWERVHLTKIGIPLPSQENGSKVVFTTRFLEICNE
MEAQKVKVECLRANEAWELFREKVGEETLHSHPDIPGLAQKMAAKCGGLP
LSLITIGRAMASKKTPQAWEYAIEVLKKSAHKLARMGQEVYPVLKFSYDS
LHCDTMRSCLLYCGLYPEDVLILKSELIEYWFCEGLLDEFDSVRRARLQG
YNIIDSLVNSCLLEEDGEYYVKMHDVIRDMTLWIAGESEAPEKSFFVQAG
LQLTETPDVGKWENVRRLSLAGNKIKDLTSTPTCPNLETLLLNYNELEVI
SDGFFKLMPNLRVLNLAGNRGLRQLPEGISELVSLECLNLSRTGLRELSI
KLKSLTKLRYLDLRYTDDLRRIPGKLISSFPKLQIFRMFRSGGGYSQEEM
VADNEDGIVELGCLPHLNGGINDFHNPYETEGDNLLNDGNEGLIEELGCL
QSLNTLSIHIMSASALERFLSFPNLPGCTQELSLCAFKESKSLNVLSLAN
MQCLERLDISECARLEEMKIEKEGEGRMIQASLFRTLREVTIFECGNLRD
MTWIILVPNLRFLWVVNCLKMEEIMSKEKMSEAADLVRSLNPNPFAKLQN
LTLQFLPELKSIHWDVLPFPCLTEIFVRECPKLRELPLSSDSAKGNPICI
QGEKEWWETLEWKNKATQNAFLPFFEPH*
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