Tc06v2_t001860.2

Overview
NameTc06v2_t001860.2
Unique NameTc06v2_t001860.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2430
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 35 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphospholipase D alpha 1, transcript variant X2
NotePhospholipase D alpha 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595246
GenbankXM_018123461.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g001860Tc06v2_g001860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p001860.2Tc06v2_p001860.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto315351auto315351Theobroma cacaoexon
exon-auto315352auto315352Theobroma cacaoexon
exon-auto315353auto315353Theobroma cacaoexon
exon-auto315354auto315354Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto315355auto315355Theobroma cacaoCDS
CDS-auto315356auto315356Theobroma cacaoCDS
CDS-auto315357auto315357Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t001860.2 ID=Tc06v2_t001860.2|Name=Tc06v2_t001860.2|organism=Theobroma cacao|type=mRNA|length=2430bp
ATGGAGGATATATTGCTTCATGGGACTTTACATGTTACGATCTATGAAGC
TGATAAGCTTCATAGTGGTGGTGGAGGTGGTCACTTCTTCCGGAAGCTTA
TGGCTAATGTTGAGGAGACAATTGGTATTGGCAAAGGAATTCCAAAGATT
TACGCAACTATTGATCTTGAAAGGGCTAGAGTTGGAAGAACCAGAATAAT
AGAAAAAGAAATTTCCAACCCAAGGTGGTACGAGTCTTTTCACATTTACT
GTGCCCATCGAGCTTCCAATGTAGTATTCACTGTCAAGGATGACAATCCT
ATTGGAGCCACTCTGATTGGAAGAGCATATGTATCTGTTGATGAACTCTT
AAGTGGAGAAGAAGTGGATAGGTGGGTTGAGATCCTGGATGAAGACAAGA
ATCCTATAGAAAGTGGTGGTAAAATCCATGTGAAGCTTCAATATTTTGAT
GTGACGAGGGACCGCAACTGGAATCGCGGCATCATAAGTCGGAAATTTCC
TGGAGTTCCATTTACATTTTACTCACAGAGACAAGGATGTAAGGTTTCTC
TATACCAGGATGCTCATATCCCAGATGGATTTGTTCCTAAAATTCCTCTT
GCTGGAGGCAAATATTTTGAGCCACATAGATGTTGGGAAGATGTTTTTGA
TGCTATCACCAATGCTAAACACTTGATCTGCATTACTGGCTGGTCTGTTT
ATACTGAGATCACTTTGGTGAGAGACTCAAGAAGGCCAAAGCCTGGGGGA
GACATCACTCTTGGTGATCTGCTTAAAAAGAAAGCAAGTGAAGGTGTCAG
GGTTAATATGCTTGTTTGGGATGACAGAACATCTGTTGGTTTGCTGAAGA
AGGATGGACTGATGGCAACCCATGATGAGGAAACTGAAAACTTCTTCAAG
GATACTGATGTCAACTGTGTCTTATGCCCTCGTAATCCAGACGATGGTGG
AAGTTTTGTCCAGGATTTACAGATTTCTACCATGTTCACTCATCACCAGA
AAATTGTTGTGGTGGATGCTGCAATGCCTAATGGAGATACAGAGACGAGG
AGAATTGTGAGTTTTGTCGGAGGTATTGATCTTTGTGATGGCAGATATGA
CACCCCTTTCCATTCCCTTTTCAGGACCTTGGACACGGCTCACCATGATG
ATTTCCATCAGCCAAACTTTACTGGTGCTGCAATCACCAAAGGTGGTCCA
AGGGAACCTTGGCACGACATCCACTCCCGACTTGAAGGGCCAATTGCTTG
GGATGTCTTGTTCAATTTTGAGCAAAGATGGAAAAAACAAGGTGGTAAAG
ATGTGCTTGTTAAGCTGAGGGAGCTTGAAGGTATCATCATCCCCCCATCT
CCAGTTACGTTCCTTGATGACCATGAGACTTGGAATGTGCAATTATTTAG
ATCCATTGATGGTGGGGCTGCTTTTGGATTCCCTGAGACACCAGAAGATG
CTGCCAGGGCTGGGCTTGTCAGTGGAAAGGACAATATTATTGACCGAAGT
ATTCAGGATGCCTATATTAATGCTATCAGACGAGCAAAGAATTACATCTA
TATTGAAAATCAGTATTTCCTTGGAAGCTCCTTTGGCTGGAGTGCTGATG
GCATTAAGCCTGAGGATATCAATGCTTTGCATCTGATTCCAAAAGAGCTT
TCACTTAAGATTGTTAGCAAGATTCAGGCAGGAGAGAGGTTTACAGTTTA
TGTTGTTGTCCCTATGTGGCCAGAAGGAATCCCAGAGAGTGCATCAGTTC
AGGCAATATTAGATTGGCAGAAAAGGACAATGGACATGATGTATAGTGAT
ATCATTAATGCTCTCAGAGATAAGGGTAGTGAGGAGGATCCCCGAAACTA
TTTAACATTCTTCTGCCTTGGGAACCGGGAGGTGAAGAATGGTGGAGAAT
ATGAACCTTCAGAAAAGCCAGAGCCTGATACAGATTATGCCAGAGCCCAG
GAGGCCCGTCGTTTCATGATCTATGTTCATGCCAAAATGATGATTGTTGA
TGATGAATACATAATAATTGGATCAGCCAACATTAACCAACGATCAATGG
ATGGTGCTAGAGACTCTGAGATAGCCATGGGAGCCTATCAACCATATCAT
CTATCAGTTAGGCAACCGGCACGAGGTCAGGTCCATGGTTTCCGTATGGC
ACTGTGGTATGAGCACCTTGGCATGCTTGATGATACCTTCCTCTTTCCAG
AAAGTGAGGAGTGTGTCAGGAAGGTGAACCAGATTGCTGACAAATATTGG
GATCTGTATTCAAGTGAGTCACTTGAGCGAGACTTGCCTGGTCACCTCCT
TCGATACCCCATTGGTATTTCTAGTGAGGGAACCGTAACTGAACTGCCAG
GCTTTGAGTTCTTCCCTGACACAAAGGCTCGTGTTCTTGGTGCCAAATCT
GATTACCTCCCCCCTATCCTCACTACTTAG
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protein sequence of Tc06v2_p001860.2

>Tc06v2_p001860.2 ID=Tc06v2_p001860.2|Name=Tc06v2_p001860.2|organism=Theobroma cacao|type=polypeptide|length=810bp
MEDILLHGTLHVTIYEADKLHSGGGGGHFFRKLMANVEETIGIGKGIPKI
YATIDLERARVGRTRIIEKEISNPRWYESFHIYCAHRASNVVFTVKDDNP
IGATLIGRAYVSVDELLSGEEVDRWVEILDEDKNPIESGGKIHVKLQYFD
VTRDRNWNRGIISRKFPGVPFTFYSQRQGCKVSLYQDAHIPDGFVPKIPL
AGGKYFEPHRCWEDVFDAITNAKHLICITGWSVYTEITLVRDSRRPKPGG
DITLGDLLKKKASEGVRVNMLVWDDRTSVGLLKKDGLMATHDEETENFFK
DTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDAAMPNGDTETR
RIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGP
REPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVKLRELEGIIIPPS
PVTFLDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRS
IQDAYINAIRRAKNYIYIENQYFLGSSFGWSADGIKPEDINALHLIPKEL
SLKIVSKIQAGERFTVYVVVPMWPEGIPESASVQAILDWQKRTMDMMYSD
IINALRDKGSEEDPRNYLTFFCLGNREVKNGGEYEPSEKPEPDTDYARAQ
EARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYH
LSVRQPARGQVHGFRMALWYEHLGMLDDTFLFPESEECVRKVNQIADKYW
DLYSSESLERDLPGHLLRYPIGISSEGTVTELPGFEFFPDTKARVLGAKS
DYLPPILTT*
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