Tc06v2_t001490.2

Overview
NameTc06v2_t001490.2
Unique NameTc06v2_t001490.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2964
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH9, transcript variant X2
NoteDExH-box ATP-dependent RNA helicase DExH9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595202
GenbankXM_018123733.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g001490Tc06v2_g001490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p001490.2Tc06v2_p001490.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto314418auto314418Theobroma cacaoexon
exon-auto314419auto314419Theobroma cacaoexon
exon-auto314420auto314420Theobroma cacaoexon
exon-auto314421auto314421Theobroma cacaoexon
exon-auto314422auto314422Theobroma cacaoexon
exon-auto314423auto314423Theobroma cacaoexon
exon-auto314424auto314424Theobroma cacaoexon
exon-auto314425auto314425Theobroma cacaoexon
exon-auto314426auto314426Theobroma cacaoexon
exon-auto314427auto314427Theobroma cacaoexon
exon-auto314428auto314428Theobroma cacaoexon
exon-auto314429auto314429Theobroma cacaoexon
exon-auto314430auto314430Theobroma cacaoexon
exon-auto314431auto314431Theobroma cacaoexon
exon-auto314432auto314432Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto314433auto314433Theobroma cacaoCDS
CDS-auto314434auto314434Theobroma cacaoCDS
CDS-auto314435auto314435Theobroma cacaoCDS
CDS-auto314436auto314436Theobroma cacaoCDS
CDS-auto314437auto314437Theobroma cacaoCDS
CDS-auto314438auto314438Theobroma cacaoCDS
CDS-auto314439auto314439Theobroma cacaoCDS
CDS-auto314440auto314440Theobroma cacaoCDS
CDS-auto314441auto314441Theobroma cacaoCDS
CDS-auto314442auto314442Theobroma cacaoCDS
CDS-auto314443auto314443Theobroma cacaoCDS
CDS-auto314444auto314444Theobroma cacaoCDS
CDS-auto314445auto314445Theobroma cacaoCDS
CDS-auto314446auto314446Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t001490.2 ID=Tc06v2_t001490.2|Name=Tc06v2_t001490.2|organism=Theobroma cacao|type=mRNA|length=2964bp
ATGGGGTCGTTGAAGAGGAAGTCGGAAGGAGAGGAGGCATCCTCGGAGTC
TCTGCCGCAGAAACAACACAAGGGAGATGGCTCAGTCATGGCGGACGAAG
CCGTGGGGTGTGTACATGAAGTTTCATACCCAGATGGTTATGTTCCTTCA
ACTTCCTCTACAGTTCCAGCTGACTCTAAACCCGCCAAGGAATTTCCTTT
TACTCTCGACCCTTTTCAGTCTGAAGCTATCAAGTGCCTCGATAATGGCC
AATCTGTCATGGTGTCAGCGCATACATCAGCCGGGAAAACTGTAGTAGCG
TTGTATGCAATTGCTATGTCTTTGCGGAATAACCAGCGGGTTATATATAC
TTCACCTATTAAGGCTCTCAGCAACCAAAAGTATAGAGAGTTTAAAGAAG
AGTTTTCCGATGTCGGTTTGATGACTGGAGACGTTACAATTGACCCTAAT
GCTTCTTGCTTGGTGATGACCACCGAAATCTGGCGTAGTATGCAGTATAA
AGGGTCGGAGGTTGTTCGGGAGGTGGCATGGATTGTTTTTGATGAAGTGC
ACTACATGCGTGATCGTGAAAGAGGTGTTGTGTGGGAAGAGAGTATTGTT
ATGGCACCAAAGAACTCTCGGTTTGTATTTCTTTCAGCAACTGTGCCTAA
TGCAAAGGAATTTGCTGATTGGGTGGCAAAGGTTCACAAGCAACCATGCC
ACATTGTTTACACTGATTATCGACCAACACCTCTTCAGCATTATATTTTC
CCTGCTGGAGGTGATGGTCTATTTTTGGTGGTAGATGAGAAAGGAAAATT
TCGTGAGGATAGCTTTCAGAAAGCTTTAAATGCTCTAGTTCCTACAAGTG
AAAGTAACAAGAAAAGAGATAATGGTAAATCACAGAAGGGGTTAGTGATG
GGAAAAGTTAGTGAACAAAGTGACATCTTCAAGTTGGTGAAAATGATCAT
TCAGCGACAGTATGACCCTGTGATAATTTTCAGCTTTAGCAAAAGGGAAT
GTGAATTTCTTGCAATGCAGATGGCAAAGATGGATTTAAATGATGATGAT
GAGAAAGGAAACATAGAAACAATCTTTTGGAGTGCCATGGATATGCTTTC
CGATGATGATAAGAAGTTACCTCAGGTATCAAACATGTTACCCCTTTTGA
AACGGGGAATAGGTGTGCATCATTCCGGCTTGCTTCCCATTCTAAAGGAA
GTGATTGAGATATTATTTCAGGAAGGGCTGATTAAGTGTTTGTTTGCCAC
AGAGACCTTCAGTATTGGGTTAAACATGCCTGCTAAAACTGTTGTGTTTA
CAAATGTTCGTAAATTTGATGGGGACAAGTTTAGATGGATATCTAGTGGA
GAGTACATACAAATGAGTGGCCGTGCTGGTCGTCGAGGTATTGATGCACG
CGGAATATGCATTCTTATGGTGGATGAAAGGATGGAACCATCTACTGCTA
AAACAATGCTCAAGGGAAATGCTGATAGTTTGAACAGTGCCTTCCACCTA
AGCTACAATATGCTATTGAATCAATTGTGCTGTGAAGACGCTGATCCTGA
AAGTATGCTTCGTAATTCGTTCTATCAGTTTCAAGCCGATCGTGCAATTC
CTGACCTTGAGAAACAAATAAAGGCTCTGGAAGAAGAGAGGGATTCCATG
ATAATTGAAGAAGAAGATAGTTTGAAGAATTATTACAATCTGATTCGGCA
ATACAAAAGTTTGAAAAATGATGTTCGTGATATCGTGTTTTCTCCAAAGT
ATTGCTTACCCTATATGAAATCTGGCAGGCCAGTATGTATACAATGCATT
GATGATGAAAAGTCTCCATCTTTCTCCATTGAGGACCAAGTTACCTGGGG
TGTTTTAATGGACTTCCATAGAGTAAAAAGTGTTGTTGAAGATGATGCCA
GTAGAAGACCAGAAGATGCAAGCTATGGCCTTGATATTCTTACAAGATGT
GCTGTGAGCAAAGATGGTCTTGGAAAGAAAAAAATTAAGATTGTCCCTTT
GAAAGAGCCTGGGGAACCTCTTGTTGTTTCTGTGCCTCTCTCTCAGGTTA
TCAGTCTAAGTAGTGCACGCTTGAACATACCCAAAGATCTTCTGCCGTTA
GAAGCTCGCGAGAATGCCTTGAAGAAGCTTTTAGAATTTATTTCTAGATA
TGCTAATGGGATGCCCTTGGAACCCGAAGAGATGAATATACAAAGTAACT
CATACAAAAAGGCAGTCCGTAGGTTGGAGGCATTAGAGAACCTGTTTGAA
AAACATGAAATTGCAAAATCCCCACTTATTGAGCAAAAGCTTAAAGTTCT
GAACGGAAAGGAAGAATTGACAGCCAAGATCAGATCAATTAAGAAAACAA
TGCGTTCTTCCACAGCATTGGCTTTTAAAGATGAGCTTAAGGCCAGGAAA
CGGGTTCTAAGGAGGCTAGGATACATTACGAGTGATGATGTTGTTGAGTT
GAAGGGCAAGGTTGCTTGTGAGATCAGTAGTGCTGATGAGTTGACTCTAA
CAGAGCTAATGTTCAGTGGGATTTTTAAGGATGTAAAGGCAGAAGAAATG
GTGTCTCTGCTCTCTTGTCTTGTTTGGCAGGAGAAGCTTCAAGATGCTGC
AAAGCCCAGGGAAGAACTTGAGTTGCTCTTTACACAACTACAAGATACAG
CACGGAGGATTGCCAAAGTTCAACTTGAGTGCAAGGTCCAAATTGATGTG
GAAAGCTTTGTAAGTTCATTTCGACCAGATATTATGGAAGCTGTATATGC
CTGGGCAAAAGGATCCAAGTTCTATGAGATTATGGAAATTACTCAGGTCT
TTGAGGGCAGCTTAATCAGAGCCATCAGAAGACTTGAAGAAGTTCTTCAG
CAGCTTATTTCAGCAGCCAAGTCAATTGGAGAGACAGAGCTCGAGTCAAA
ATTCGAAGAGGCTGTCTCTAAGATTAAAAGAGACATAGTATTTGCAGCAT
CTCTATACTTGTAG
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protein sequence of Tc06v2_p001490.2

>Tc06v2_p001490.2 ID=Tc06v2_p001490.2|Name=Tc06v2_p001490.2|organism=Theobroma cacao|type=polypeptide|length=988bp
MGSLKRKSEGEEASSESLPQKQHKGDGSVMADEAVGCVHEVSYPDGYVPS
TSSTVPADSKPAKEFPFTLDPFQSEAIKCLDNGQSVMVSAHTSAGKTVVA
LYAIAMSLRNNQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPN
ASCLVMTTEIWRSMQYKGSEVVREVAWIVFDEVHYMRDRERGVVWEESIV
MAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYTDYRPTPLQHYIF
PAGGDGLFLVVDEKGKFREDSFQKALNALVPTSESNKKRDNGKSQKGLVM
GKVSEQSDIFKLVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDD
EKGNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKE
VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG
EYIQMSGRAGRRGIDARGICILMVDERMEPSTAKTMLKGNADSLNSAFHL
SYNMLLNQLCCEDADPESMLRNSFYQFQADRAIPDLEKQIKALEEERDSM
IIEEEDSLKNYYNLIRQYKSLKNDVRDIVFSPKYCLPYMKSGRPVCIQCI
DDEKSPSFSIEDQVTWGVLMDFHRVKSVVEDDASRRPEDASYGLDILTRC
AVSKDGLGKKKIKIVPLKEPGEPLVVSVPLSQVISLSSARLNIPKDLLPL
EARENALKKLLEFISRYANGMPLEPEEMNIQSNSYKKAVRRLEALENLFE
KHEIAKSPLIEQKLKVLNGKEELTAKIRSIKKTMRSSTALAFKDELKARK
RVLRRLGYITSDDVVELKGKVACEISSADELTLTELMFSGIFKDVKAEEM
VSLLSCLVWQEKLQDAAKPREELELLFTQLQDTARRIAKVQLECKVQIDV
ESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQ
QLISAAKSIGETELESKFEEAVSKIKRDIVFAASLYL*
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