Tc06v2_t000380.3

Overview
NameTc06v2_t000380.3
Unique NameTc06v2_t000380.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1128
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
ProductGDP-L-galactose phosphorylase 1, transcript variant X3
NotePutative GDP-L-galactose phosphorylase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595075
GenbankXM_018123148.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g000380Tc06v2_g000380Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p000380.3Tc06v2_p000380.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto312096auto312096Theobroma cacaoexon
exon-auto312097auto312097Theobroma cacaoexon
exon-auto312098auto312098Theobroma cacaoexon
exon-auto312099auto312099Theobroma cacaoexon
exon-auto312100auto312100Theobroma cacaoexon
exon-auto312101auto312101Theobroma cacaoexon
exon-auto312102auto312102Theobroma cacaoexon
exon-auto312103auto312103Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto312104auto312104Theobroma cacaoCDS
CDS-auto312105auto312105Theobroma cacaoCDS
CDS-auto312106auto312106Theobroma cacaoCDS
CDS-auto312107auto312107Theobroma cacaoCDS
CDS-auto312108auto312108Theobroma cacaoCDS
CDS-auto312109auto312109Theobroma cacaoCDS
CDS-auto312110auto312110Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t000380.3 ID=Tc06v2_t000380.3|Name=Tc06v2_t000380.3|organism=Theobroma cacao|type=mRNA|length=1128bp
ATGGTTACAATGAAATGGCTTGAAGATAATAGCTTTCCAGTGAAGAATGG
AAAGTGTGAGCAGTTAATACATTCTCACTCCTTTCTTCAAGATACAAATT
TCCCTATGTACTGCTTCGGTAGCCAATCTATTGAGGAAGACAATTCATTT
GAAGGTCTTTCATGCATTGCTGAGGAAGAGCAAAGTATTTTGGATGCTGT
TCTGCTATCTCAGTGGGAAGATCGGATGCGGAAAGGTTGTTTTAGATATG
ATGTGACAGCCTCAGAAATTAAGGCCATTGCTGGAAAGATGAAGTTTCTT
TCTCAGTTGAATGAAGGACAGATAACAGGTCATCTGTCAAAACCTGAGGG
CAATACACTTCGTGAATGGGACCCTTTTGCATTTGACTGCACGAGACAGC
CAGAGGAACTACTCTTTTGTGTTTCCAGCAGCAAGAAGGCAAAATCTGAG
CTTATTCCTTCGGCTTCTGTGCCTGATAGTGCCATCTTGGTGATCATCAA
TGTAACTCCAGTTGAATATGGCCATGTCTTCTTGGTACCTTGTACCACAA
ACAGACTTTATCAGTTCCTGGATCCAAGATCAGTTGAACTAGTCACAAGG
GTTGCTGCAGAAATTAATAACTGTTCATTTCGCGTGTTCTATGATTGCTG
TAGACCTAATCGTTCTGATGTATACTTTCAGGCTTGCTACTTCCCTGACC
CTTTACCTGTGGAGTTCAGGCCTGTAGACACTGTCTATAGTGGTGGGAGG
AGAGGGATTCACATATGTTCTGTCATAGATTATCCTATTAAGACCCTCTC
TTTTCAGACCACTCATAATCTCAAGATAATGGCAGCAGCTATTTGTGAGA
TATGTTCTCATTTAGAGGAAAAGAATGTGCAATATAATCTGATGATAACT
GATTCTGGCAAAAAAATCCTTTTGTTTCTTCAGCGATCATTTGCAGCCTC
AAATGCAATTTCAGCTTGGGAATGTGGGGGTTACTTCTTATTCAGGTGTA
GGTATGAATTCGATCAAGTTACCGAGGATGCCATGCTTAAACGACTGAGC
AGTTTCTCCCTTGACGATGACAACTTTGAAGCTGTGAAGCAGCTTTGCTG
CAGCATTGCCAGTAAATTTGATAGTTGA
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protein sequence of Tc06v2_p000380.3

>Tc06v2_p000380.3 ID=Tc06v2_p000380.3|Name=Tc06v2_p000380.3|organism=Theobroma cacao|type=polypeptide|length=376bp
MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQDTNFPMYCFGSQSIEEDNSF
EGLSCIAEEEQSILDAVLLSQWEDRMRKGCFRYDVTASEIKAIAGKMKFL
SQLNEGQITGHLSKPEGNTLREWDPFAFDCTRQPEELLFCVSSSKKAKSE
LIPSASVPDSAILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTR
VAAEINNCSFRVFYDCCRPNRSDVYFQACYFPDPLPVEFRPVDTVYSGGR
RGIHICSVIDYPIKTLSFQTTHNLKIMAAAICEICSHLEEKNVQYNLMIT
DSGKKILLFLQRSFAASNAISAWECGGYFLFRCRYEFDQVTEDAMLKRLS
SFSLDDDNFEAVKQLCCSIASKFDS*
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