Tc06v2_t000380.2

Overview
NameTc06v2_t000380.2
Unique NameTc06v2_t000380.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1128
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductGDP-L-galactose phosphorylase 1, transcript variant X1
NotePutative GDP-L-galactose phosphorylase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595075
GenbankXM_007022866.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g000380Tc06v2_g000380Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p000380.2Tc06v2_p000380.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto312078auto312078Theobroma cacaoexon
exon-auto312079auto312079Theobroma cacaoexon
exon-auto312080auto312080Theobroma cacaoexon
exon-auto312081auto312081Theobroma cacaoexon
exon-auto312082auto312082Theobroma cacaoexon
exon-auto312083auto312083Theobroma cacaoexon
exon-auto312084auto312084Theobroma cacaoexon
exon-auto312085auto312085Theobroma cacaoexon
exon-auto312086auto312086Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto312087auto312087Theobroma cacaoCDS
CDS-auto312088auto312088Theobroma cacaoCDS
CDS-auto312089auto312089Theobroma cacaoCDS
CDS-auto312090auto312090Theobroma cacaoCDS
CDS-auto312091auto312091Theobroma cacaoCDS
CDS-auto312092auto312092Theobroma cacaoCDS
CDS-auto312093auto312093Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t000380.2 ID=Tc06v2_t000380.2|Name=Tc06v2_t000380.2|organism=Theobroma cacao|type=mRNA|length=1128bp
ATGGTTACAATGAAATGGCTTGAAGATAATAGCTTTCCAGTGAAGAATGG
AAAGTGTGAGCAGTTAATACATTCTCACTCCTTTCTTCAAGATACAAATT
TCCCTATGTACTGCTTCGGTAGCCAATCTATTGAGGAAGACAATTCATTT
GAAGGTCTTTCATGCATTGCTGAGGAAGAGCAAAGTATTTTGGATGCTGT
TCTGCTATCTCAGTGGGAAGATCGGATGCGGAAAGGTTGTTTTAGATATG
ATGTGACAGCCTCAGAAATTAAGGCCATTGCTGGAAAGATGAAGTTTCTT
TCTCAGTTGAATGAAGGACAGATAACAGGTCATCTGTCAAAACCTGAGGG
CAATACACTTCGTGAATGGGACCCTTTTGCATTTGACTGCACGAGACAGC
CAGAGGAACTACTCTTTTGTGTTTCCAGCAGCAAGAAGGCAAAATCTGAG
CTTATTCCTTCGGCTTCTGTGCCTGATAGTGCCATCTTGGTGATCATCAA
TGTAACTCCAGTTGAATATGGCCATGTCTTCTTGGTACCTTGTACCACAA
ACAGACTTTATCAGTTCCTGGATCCAAGATCAGTTGAACTAGTCACAAGG
GTTGCTGCAGAAATTAATAACTGTTCATTTCGCGTGTTCTATGATTGCTG
TAGACCTAATCGTTCTGATGTATACTTTCAGGCTTGCTACTTCCCTGACC
CTTTACCTGTGGAGTTCAGGCCTGTAGACACTGTCTATAGTGGTGGGAGG
AGAGGGATTCACATATGTTCTGTCATAGATTATCCTATTAAGACCCTCTC
TTTTCAGACCACTCATAATCTCAAGATAATGGCAGCAGCTATTTGTGAGA
TATGTTCTCATTTAGAGGAAAAGAATGTGCAATATAATCTGATGATAACT
GATTCTGGCAAAAAAATCCTTTTGTTTCTTCAGCGATCATTTGCAGCCTC
AAATGCAATTTCAGCTTGGGAATGTGGGGGTTACTTCTTATTCAGGTGTA
GGTATGAATTCGATCAAGTTACCGAGGATGCCATGCTTAAACGACTGAGC
AGTTTCTCCCTTGACGATGACAACTTTGAAGCTGTGAAGCAGCTTTGCTG
CAGCATTGCCAGTAAATTTGATAGTTGA
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protein sequence of Tc06v2_p000380.2

>Tc06v2_p000380.2 ID=Tc06v2_p000380.2|Name=Tc06v2_p000380.2|organism=Theobroma cacao|type=polypeptide|length=376bp
MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQDTNFPMYCFGSQSIEEDNSF
EGLSCIAEEEQSILDAVLLSQWEDRMRKGCFRYDVTASEIKAIAGKMKFL
SQLNEGQITGHLSKPEGNTLREWDPFAFDCTRQPEELLFCVSSSKKAKSE
LIPSASVPDSAILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTR
VAAEINNCSFRVFYDCCRPNRSDVYFQACYFPDPLPVEFRPVDTVYSGGR
RGIHICSVIDYPIKTLSFQTTHNLKIMAAAICEICSHLEEKNVQYNLMIT
DSGKKILLFLQRSFAASNAISAWECGGYFLFRCRYEFDQVTEDAMLKRLS
SFSLDDDNFEAVKQLCCSIASKFDS*
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