Tc06v2_t000170.3

Overview
NameTc06v2_t000170.3
Unique NameTc06v2_t000170.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length969
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productprobable ADP-ribosylation factor GTPase-activating protein AGD13, transcript variant X2
NoteADP-ribosylation factor GTPase-activating protein AGD12
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595048
GenbankXM_018123161.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g000170Tc06v2_g000170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p000170.3Tc06v2_p000170.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto311636auto311636Theobroma cacaoexon
exon-auto311637auto311637Theobroma cacaoexon
exon-auto311638auto311638Theobroma cacaoexon
exon-auto311639auto311639Theobroma cacaoexon
exon-auto311640auto311640Theobroma cacaoexon
exon-auto311641auto311641Theobroma cacaoexon
exon-auto311642auto311642Theobroma cacaoexon
exon-auto311643auto311643Theobroma cacaoexon
exon-auto311644auto311644Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto311645auto311645Theobroma cacaoCDS
CDS-auto311646auto311646Theobroma cacaoCDS
CDS-auto311647auto311647Theobroma cacaoCDS
CDS-auto311648auto311648Theobroma cacaoCDS
CDS-auto311649auto311649Theobroma cacaoCDS
CDS-auto311650auto311650Theobroma cacaoCDS
CDS-auto311651auto311651Theobroma cacaoCDS
CDS-auto311652auto311652Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t000170.3 ID=Tc06v2_t000170.3|Name=Tc06v2_t000170.3|organism=Theobroma cacao|type=mRNA|length=969bp
ATGAGTGGAACTACCACAGCCAAAGCAAGATTGAAGAACTTATTGAGTCA
GACTGATAATCGCCATTGTGCTGATTGTGCTGCTCCGGATCCAAAATGGG
CATCAGCAAATATTGGCGTCTTTATATGCCTGAAGTGTTGCAGTGTGCAC
AGAAGCCTTGGTACACACATCTCCAAGGTTTTATCTGTGACATTGGATGA
ATGGTCTGATGATGAAATTGATGCCATGATTGAAGTTGGAGGAAATTCCT
CTGCTAATGCAATCTACGAGGCATATATACCTGAAAATTGTTCAAAGCCT
GGCCCAGATGCTAGTCATGATGAGCGGAGGAGATTCATCAGGTCCAAGTA
TGAGCTTCAAGAATTTGTGAAACCTAGCTTGCGGATCACATCAGGGAAGA
GTTCTGCTTCTCTTCAATCAAGCTTTTCTAGAAAGATTTTGGATAGTTTT
CGAGTAAAGCCATCAGAAAATTCGGAAGGCATGGTAGAATTTATTGGGTT
ACTGAAGGTCAAAGTGGTAAAAGGCACAAATTTAGCCATTCGGGATATGA
TGACCAGTGATCCTTATGTTGTCCTGACTCTTGGGCAGCAGACTGTTCAG
ACGACTATAATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCAT
GCTATCTGTTCCTCAGAACTTTGGGCCTGTGAAGTTGCAAGTGTTTGATC
ATGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATATC
CAGCCCTTGATAACATCTGCAATGGCATACGGGGACCCTGAAATGTTTGG
AAATATGCAGATTGGCAAATGGCTCAAGTCCCACGATAACGCCCTCATAG
AGGACAGCATCATCAACATTGTGGATGGGAAGGTGAAACAAGATGTGTCA
CTCAAGCTCCAAAATGTTGAATCTGGAGAACTATATCTAGAGGTAGAGTG
GCTGCCTCTTGATCAATAG
back to top

protein sequence of Tc06v2_p000170.3

>Tc06v2_p000170.3 ID=Tc06v2_p000170.3|Name=Tc06v2_p000170.3|organism=Theobroma cacao|type=polypeptide|length=323bp
MSGTTTAKARLKNLLSQTDNRHCADCAAPDPKWASANIGVFICLKCCSVH
RSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPENCSKP
GPDASHDERRRFIRSKYELQEFVKPSLRITSGKSSASLQSSFSRKILDSF
RVKPSENSEGMVEFIGLLKVKVVKGTNLAIRDMMTSDPYVVLTLGQQTVQ
TTIIKSNLNPVWNEELMLSVPQNFGPVKLQVFDHDTFSADDIMGEAEVDI
QPLITSAMAYGDPEMFGNMQIGKWLKSHDNALIEDSIINIVDGKVKQDVS
LKLQNVESGELYLEVEWLPLDQ*
back to top