Tc06v2_t000170.2

Overview
NameTc06v2_t000170.2
Unique NameTc06v2_t000170.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length969
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprobable ADP-ribosylation factor GTPase-activating protein AGD13, transcript variant X1
NoteADP-ribosylation factor GTPase-activating protein AGD12
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595048
GenbankXM_007022817.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g000170Tc06v2_g000170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p000170.2Tc06v2_p000170.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto311617auto311617Theobroma cacaoexon
exon-auto311618auto311618Theobroma cacaoexon
exon-auto311619auto311619Theobroma cacaoexon
exon-auto311620auto311620Theobroma cacaoexon
exon-auto311621auto311621Theobroma cacaoexon
exon-auto311622auto311622Theobroma cacaoexon
exon-auto311623auto311623Theobroma cacaoexon
exon-auto311624auto311624Theobroma cacaoexon
exon-auto311625auto311625Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto311626auto311626Theobroma cacaoCDS
CDS-auto311627auto311627Theobroma cacaoCDS
CDS-auto311628auto311628Theobroma cacaoCDS
CDS-auto311629auto311629Theobroma cacaoCDS
CDS-auto311630auto311630Theobroma cacaoCDS
CDS-auto311631auto311631Theobroma cacaoCDS
CDS-auto311632auto311632Theobroma cacaoCDS
CDS-auto311633auto311633Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t000170.2 ID=Tc06v2_t000170.2|Name=Tc06v2_t000170.2|organism=Theobroma cacao|type=mRNA|length=969bp
ATGAGTGGAACTACCACAGCCAAAGCAAGATTGAAGAACTTATTGAGTCA
GACTGATAATCGCCATTGTGCTGATTGTGCTGCTCCGGATCCAAAATGGG
CATCAGCAAATATTGGCGTCTTTATATGCCTGAAGTGTTGCAGTGTGCAC
AGAAGCCTTGGTACACACATCTCCAAGGTTTTATCTGTGACATTGGATGA
ATGGTCTGATGATGAAATTGATGCCATGATTGAAGTTGGAGGAAATTCCT
CTGCTAATGCAATCTACGAGGCATATATACCTGAAAATTGTTCAAAGCCT
GGCCCAGATGCTAGTCATGATGAGCGGAGGAGATTCATCAGGTCCAAGTA
TGAGCTTCAAGAATTTGTGAAACCTAGCTTGCGGATCACATCAGGGAAGA
GTTCTGCTTCTCTTCAATCAAGCTTTTCTAGAAAGATTTTGGATAGTTTT
CGAGTAAAGCCATCAGAAAATTCGGAAGGCATGGTAGAATTTATTGGGTT
ACTGAAGGTCAAAGTGGTAAAAGGCACAAATTTAGCCATTCGGGATATGA
TGACCAGTGATCCTTATGTTGTCCTGACTCTTGGGCAGCAGACTGTTCAG
ACGACTATAATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCAT
GCTATCTGTTCCTCAGAACTTTGGGCCTGTGAAGTTGCAAGTGTTTGATC
ATGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATATC
CAGCCCTTGATAACATCTGCAATGGCATACGGGGACCCTGAAATGTTTGG
AAATATGCAGATTGGCAAATGGCTCAAGTCCCACGATAACGCCCTCATAG
AGGACAGCATCATCAACATTGTGGATGGGAAGGTGAAACAAGATGTGTCA
CTCAAGCTCCAAAATGTTGAATCTGGAGAACTATATCTAGAGGTAGAGTG
GCTGCCTCTTGATCAATAG
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protein sequence of Tc06v2_p000170.2

>Tc06v2_p000170.2 ID=Tc06v2_p000170.2|Name=Tc06v2_p000170.2|organism=Theobroma cacao|type=polypeptide|length=323bp
MSGTTTAKARLKNLLSQTDNRHCADCAAPDPKWASANIGVFICLKCCSVH
RSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPENCSKP
GPDASHDERRRFIRSKYELQEFVKPSLRITSGKSSASLQSSFSRKILDSF
RVKPSENSEGMVEFIGLLKVKVVKGTNLAIRDMMTSDPYVVLTLGQQTVQ
TTIIKSNLNPVWNEELMLSVPQNFGPVKLQVFDHDTFSADDIMGEAEVDI
QPLITSAMAYGDPEMFGNMQIGKWLKSHDNALIEDSIINIVDGKVKQDVS
LKLQNVESGELYLEVEWLPLDQ*
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