Tc06v2_t000160.1

Overview
NameTc06v2_t000160.1
Unique NameTc06v2_t000160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1131
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productferredoxin--NADP reductase, root-type isozyme, chloroplastic
NoteFerredoxin--NADP reductase, root-type isozyme, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595047
GenbankXM_018123160.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g000160Tc06v2_g000160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p000160.1Tc06v2_p000160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto311587auto311587Theobroma cacaoexon
exon-auto311588auto311588Theobroma cacaoexon
exon-auto311589auto311589Theobroma cacaoexon
exon-auto311590auto311590Theobroma cacaoexon
exon-auto311591auto311591Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto311592auto311592Theobroma cacaoCDS
CDS-auto311593auto311593Theobroma cacaoCDS
CDS-auto311594auto311594Theobroma cacaoCDS
CDS-auto311595auto311595Theobroma cacaoCDS
CDS-auto311596auto311596Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t000160.1 ID=Tc06v2_t000160.1|Name=Tc06v2_t000160.1|organism=Theobroma cacao|type=mRNA|length=1131bp
ATGGCTCATTCTGCTGTATCCCAGGTTTCTGTAGCTGTTCCCATTGGAAG
CGATATTTCTCTAAGGAGATCTGTATCCAAGAGGAACAGTATAAGCTTTG
GTGACAAGTCATGGGTTTCCACCTTATCTTTGGATTTAAAATCACGAAAT
ATACAGAAGAGCAATCAGTACATAGTATGCATGTCAGTGCAACAAGCCAG
CAAATCCAAGGTTGCAGTTTCACCTTTAGAGTTGGAAAATGCAAAAGAGC
CCCCTCTAAATTTATTCAAGCCCAAGGAACCTTACACAGCTACCATTGTT
TCTGTGGAGAGACTTGTCGGTCCAAAAGCTCCGGGTGAGACTTGCCATAT
TGTGATTGACCATGGTGGAAATGTACCCTACTGGGAAGGGCAGAGCTACG
GTGTTATCCCTCCTGGTGAAAATCCAAAGAAACCAGGGTCTCCCCACAAT
GTTCGTCTGTATTCCATTGCCTCAACCAGGTACGGAGATTCTTTTGATGG
GAAGACAGCCAGTTTGTGTGTTCGTCGTGCTGTCTATTATGACCCTGAGA
CTGGAAAGGAGGATCCTTCAAAGAATGGTGTATGTAGCAATTTCCTATGC
AACACCAAGCCTGGAGATAAAGTTCAGATAACTGGTCCCTCTGGCAAAAT
AATGCTTTTGCCTGAAGATAACCCAAATGCCTACCACATAATGATAGCTA
CTGGCACTGGTGTAGCTCCATTCAGAGGCTACCTACGGCGCATGTTCATG
GAAGATGTTACATTCAAGTTCCGTGGCCTTGCATGGCTTTTCCTTGGGGT
AGCCAACGCTGACAGTCTCCTTTATGATGATGAGTTTACCAAATACCTTC
AGGACTTCCCAGATCACTTCCGATATGATGGAGCTCTTAGTAGAGAGCAG
AAGAACAAGAGTGGGGGCAAGATGTATGTTCAGGATAAGATCGAGGAATA
CAGTGATGAAATTTTCAAGCTCTTGGATGATGGAGCCCATATATATTTCT
GTGGGCTCAAGGGAATGATGCCCGGGATCCAAGAAACACTGAAAAGAGTT
GCTGAGAAGAGAGGAGAGAATTGGGATGAGAAGCTTTCACAACTCAAGAA
GAAGAAACAATGGCACGTAGAAGTATATTAG
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protein sequence of Tc06v2_p000160.1

>Tc06v2_p000160.1 ID=Tc06v2_p000160.1|Name=Tc06v2_p000160.1|organism=Theobroma cacao|type=polypeptide|length=377bp
MAHSAVSQVSVAVPIGSDISLRRSVSKRNSISFGDKSWVSTLSLDLKSRN
IQKSNQYIVCMSVQQASKSKVAVSPLELENAKEPPLNLFKPKEPYTATIV
SVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGSPHN
VRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPSKNGVCSNFLC
NTKPGDKVQITGPSGKIMLLPEDNPNAYHIMIATGTGVAPFRGYLRRMFM
EDVTFKFRGLAWLFLGVANADSLLYDDEFTKYLQDFPDHFRYDGALSREQ
KNKSGGKMYVQDKIEEYSDEIFKLLDDGAHIYFCGLKGMMPGIQETLKRV
AEKRGENWDEKLSQLKKKKQWHVEVY*
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