Tc05v2_t027530.5

Overview
NameTc05v2_t027530.5
Unique NameTc05v2_t027530.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1158
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productflap endonuclease 1, transcript variant X4
NoteFlap endonuclease 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600652
GenbankXM_018122082.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g027530Tc05v2_g027530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p027530.5Tc05v2_p027530.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto310649auto310649Theobroma cacaoexon
exon-auto310650auto310650Theobroma cacaoexon
exon-auto310651auto310651Theobroma cacaoexon
exon-auto310652auto310652Theobroma cacaoexon
exon-auto310653auto310653Theobroma cacaoexon
exon-auto310654auto310654Theobroma cacaoexon
exon-auto310655auto310655Theobroma cacaoexon
exon-auto310656auto310656Theobroma cacaoexon
exon-auto310657auto310657Theobroma cacaoexon
exon-auto310658auto310658Theobroma cacaoexon
exon-auto310659auto310659Theobroma cacaoexon
exon-auto310660auto310660Theobroma cacaoexon
exon-auto310661auto310661Theobroma cacaoexon
exon-auto310662auto310662Theobroma cacaoexon
exon-auto310663auto310663Theobroma cacaoexon
exon-auto310664auto310664Theobroma cacaoexon
exon-auto310665auto310665Theobroma cacaoexon
exon-auto310666auto310666Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto310667auto310667Theobroma cacaoCDS
CDS-auto310668auto310668Theobroma cacaoCDS
CDS-auto310669auto310669Theobroma cacaoCDS
CDS-auto310670auto310670Theobroma cacaoCDS
CDS-auto310671auto310671Theobroma cacaoCDS
CDS-auto310672auto310672Theobroma cacaoCDS
CDS-auto310673auto310673Theobroma cacaoCDS
CDS-auto310674auto310674Theobroma cacaoCDS
CDS-auto310675auto310675Theobroma cacaoCDS
CDS-auto310676auto310676Theobroma cacaoCDS
CDS-auto310677auto310677Theobroma cacaoCDS
CDS-auto310678auto310678Theobroma cacaoCDS
CDS-auto310679auto310679Theobroma cacaoCDS
CDS-auto310680auto310680Theobroma cacaoCDS
CDS-auto310681auto310681Theobroma cacaoCDS
CDS-auto310682auto310682Theobroma cacaoCDS
CDS-auto310683auto310683Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t027530.5 ID=Tc05v2_t027530.5|Name=Tc05v2_t027530.5|organism=Theobroma cacao|type=mRNA|length=1158bp
ATGGGCATCAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACCCAAGGC
CATGAAGGAACAGAAATTCGAGAGCTTTTTCGGCCGCAAGATCGCCATCG
ACGCCAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGTCGTAGTGGG
ACTGAAATGCTCACCAATGAAGCGGGTGAGGTCACCAGTCATCTGCAGGG
CATGTTTACTCGTACAATTCGGCTTCTCGAAGCTGGGATCAAACCTGTCT
ATGTTTTTGACGGTCAGCCTCCTGATTTGAAGAAACAAGAGCTTGCAAAA
CGTTACTCAAAGAGGGCAGATGCTACTGAGGATTTGCAACAAGCCATGGA
GGCTGGCAATAAGGAGGACATTGAAAAATTCAGCAAGCGGACAGTAAAGG
TGACAAAGCAGCACAATGAAGACTGTAAACGGCTTTTAAGACTTATGGGG
GTACCTGTGATCGAGGCTTCTTCTGAAGCAGAGGCGCAATGTGCTGCACT
TTGCAAATCAGGAAAGTTTCAGGTTTATGCTGTGGCTTCTGAGGATATGG
ATTCTTTAACCTTTGGAGCTCCTAGATTTCTTCGCCATTTAATGGACCCT
AGCTCAAGAAAAGTTCCGGTCATGGAGTTTGAAGTTGCAAAGGTTTTGGA
GGAGCTGAATCTTACCATGGATCAATTCATTGACTTGTGCATTCTTTCTG
GCTGTGATTATTGTGACAGCATTCGAGGTATTGGGGGACAGACAGCTTTG
AAGTTAATTCGTCAACATGGGTCTATAGAGCATATTCTTCAGAACATAAA
CAAAGAGAGGTACTCAATACCTGATGATTGGCCATATCAAGAGGCTCGAC
AGCTTTTTCAAGAACCATTAGTCTGCACTGATGATGAGCAACTTGAGATG
AAGTGGAATGCTCCAGATGACGAAGGGTTGATAACCTTTCTGGTGAATGA
AAATGGGTTCAACGGTGACAGAGTGACAAAGGCAATAGAAAAAATTAAAG
CAGCCAAGAACAAGTCATCGCAGGGCCGATTAGAGTCATTTTTTAAGCCA
GTTGGTAACACATCTATACCAATTAAACGGAAGGAAACACCACAGAACAT
TCCTAAAGAAACTACTAACAAAAAGTTGAAGGCTGGTGGGGGTAAGAAAA
AGAAGTAA
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protein sequence of Tc05v2_p027530.5

>Tc05v2_p027530.5 ID=Tc05v2_p027530.5|Name=Tc05v2_p027530.5|organism=Theobroma cacao|type=polypeptide|length=386bp
MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSG
TEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAK
RYSKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMG
VPVIEASSEAEAQCAALCKSGKFQVYAVASEDMDSLTFGAPRFLRHLMDP
SSRKVPVMEFEVAKVLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL
KLIRQHGSIEHILQNINKERYSIPDDWPYQEARQLFQEPLVCTDDEQLEM
KWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKAAKNKSSQGRLESFFKP
VGNTSIPIKRKETPQNIPKETTNKKLKAGGGKKKK*
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