Tc05v2_t025980.1

Overview
NameTc05v2_t025980.1
Unique NameTc05v2_t025980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length912
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductF-actin-capping protein subunit alpha
NoteF-actin-capping protein subunit alpha
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600476
GenbankXM_007030940.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g025980Tc05v2_g025980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p025980.1Tc05v2_p025980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto307019auto307019Theobroma cacaoexon
exon-auto307020auto307020Theobroma cacaoexon
exon-auto307021auto307021Theobroma cacaoexon
exon-auto307022auto307022Theobroma cacaoexon
exon-auto307023auto307023Theobroma cacaoexon
exon-auto307024auto307024Theobroma cacaoexon
exon-auto307025auto307025Theobroma cacaoexon
exon-auto307026auto307026Theobroma cacaoexon
exon-auto307027auto307027Theobroma cacaoexon
exon-auto307028auto307028Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto307029auto307029Theobroma cacaoCDS
CDS-auto307030auto307030Theobroma cacaoCDS
CDS-auto307031auto307031Theobroma cacaoCDS
CDS-auto307032auto307032Theobroma cacaoCDS
CDS-auto307033auto307033Theobroma cacaoCDS
CDS-auto307034auto307034Theobroma cacaoCDS
CDS-auto307035auto307035Theobroma cacaoCDS
CDS-auto307036auto307036Theobroma cacaoCDS
CDS-auto307037auto307037Theobroma cacaoCDS
CDS-auto307038auto307038Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t025980.1 ID=Tc05v2_t025980.1|Name=Tc05v2_t025980.1|organism=Theobroma cacao|type=mRNA|length=912bp
ATGGCAGAAGAAGAAACAGAGCTGAGTGAGGAGCAAAGGAAAGAGATCGC
CAAATGGTTCCTCCTCAACGCTCCCGCTGGCGAAATCCAATACGTCGCTA
AAGATTTGAAGTCTGTTTTGAATGATGACGACGTGTACAATGAGGCGGTA
TCGGAGGCATTTCCTGTTTACAACAAATCTCACATGATTTGCCTCGAAAT
GCCTGGTAGATTCGGAGATGTCCTGGTTACATCATATGGGGAGCTTCAGG
ATAATGAGTATCTAGACCCCAAGACTGCTCAAGTTGCCATAGTTGACCAT
GTCAAACAGGTTTGTACAGAGGTGAGACCTGCCACTGATGAGGAGCTTCC
ATCCCCGTATATAGAGGAATACCGATGTGCTTTGGACGTAGAAATGTCAA
AGTATGTTGGTGAAGCTTATCCAAAAGGTTTTTGTTCAGTTTACTGTACT
AATGGAAAAGATGTGGAGGGACCTGGATCTGATTTTGAGCTTGTTGTAGT
GATTTCTGCTGCTAGACTTAGCCCACAGAATTTCTGCAATGGAAGTTGGC
GGTCAATATGGAACATTGAGTTTAAAGATGATATTCAAATACTGGAATTG
AAAGGCAAATTGCAGGTCGGTGCACACTATTTTGAAGAGGGAAACGTGCA
ATTAGATGCAAGACATGAATGTAAAGATTCTACATTATTTCAGTCCCCTG
ATGATAGTGCAGTTTCTATAGCCACCATAATTCGCCACCATGAGACAGAG
TACCTGGCATCCCTTGAGGCATCCTATTTGAATTTGCCAGATACCACTTT
CAAGGATCTTCGCAGGAAACTTCCAGTTACTCGAACCTTATTCCCATGGC
ATAACACTTCACAATTCAGCCTGACAAGAGAGATATCAAAAGAACTGGGA
ATTGGAAAGTGA
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protein sequence of Tc05v2_p025980.1

>Tc05v2_p025980.1 ID=Tc05v2_p025980.1|Name=Tc05v2_p025980.1|organism=Theobroma cacao|type=polypeptide|length=304bp
MAEEETELSEEQRKEIAKWFLLNAPAGEIQYVAKDLKSVLNDDDVYNEAV
SEAFPVYNKSHMICLEMPGRFGDVLVTSYGELQDNEYLDPKTAQVAIVDH
VKQVCTEVRPATDEELPSPYIEEYRCALDVEMSKYVGEAYPKGFCSVYCT
NGKDVEGPGSDFELVVVISAARLSPQNFCNGSWRSIWNIEFKDDIQILEL
KGKLQVGAHYFEEGNVQLDARHECKDSTLFQSPDDSAVSIATIIRHHETE
YLASLEASYLNLPDTTFKDLRRKLPVTRTLFPWHNTSQFSLTREISKELG
IGK*
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