Tc05v2_t025710.1

Overview
NameTc05v2_t025710.1
Unique NameTc05v2_t025710.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length999
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productcyclin-H1-1, transcript variant X1
NoteCyclin-H1-1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600447
GenbankXM_007030893.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g025710Tc05v2_g025710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p025710.1Tc05v2_p025710.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto306220auto306220Theobroma cacaoexon
exon-auto306221auto306221Theobroma cacaoexon
exon-auto306222auto306222Theobroma cacaoexon
exon-auto306223auto306223Theobroma cacaoexon
exon-auto306224auto306224Theobroma cacaoexon
exon-auto306225auto306225Theobroma cacaoexon
exon-auto306226auto306226Theobroma cacaoexon
exon-auto306227auto306227Theobroma cacaoexon
exon-auto306228auto306228Theobroma cacaoexon
exon-auto306229auto306229Theobroma cacaoexon
exon-auto306230auto306230Theobroma cacaoexon
exon-auto306231auto306231Theobroma cacaoexon
exon-auto306232auto306232Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto306233auto306233Theobroma cacaoCDS
CDS-auto306234auto306234Theobroma cacaoCDS
CDS-auto306235auto306235Theobroma cacaoCDS
CDS-auto306236auto306236Theobroma cacaoCDS
CDS-auto306237auto306237Theobroma cacaoCDS
CDS-auto306238auto306238Theobroma cacaoCDS
CDS-auto306239auto306239Theobroma cacaoCDS
CDS-auto306240auto306240Theobroma cacaoCDS
CDS-auto306241auto306241Theobroma cacaoCDS
CDS-auto306242auto306242Theobroma cacaoCDS
CDS-auto306243auto306243Theobroma cacaoCDS
CDS-auto306244auto306244Theobroma cacaoCDS
CDS-auto306245auto306245Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t025710.1 ID=Tc05v2_t025710.1|Name=Tc05v2_t025710.1|organism=Theobroma cacao|type=mRNA|length=999bp
ATGGCCGATTTTCAGACATCGACTCACAGAGCCAAGTGGATCTTCACTCC
TCAAGGACTGGTTGAGAAATACAAGGCTGCAAATCAAAGAGCAATACAAA
CACTGGAGAAGTATGGAACAACACAAATGGAAGTAGATGCTGATGGCTCA
CTGTCATACCCTGAACCTATTGCAAGAGATAATGCTGACAAGCATTCTCG
TGCAAAACCTCTTAGCATTGAAGAAGAACAATTCATGCGGGTGTTTTATG
AGAACAAACTTCGAGAAGTTTGTAGTGCGTTCTACTTTCCTAATAAAATT
CAGGCAACAGCTCTAATTTATTTCAAAAGGTTTTACCTGCAATGGTCAGT
CATGGAACATCATCCGAAGCATATAATGTTAACCTGTGTGTATGCAGCCT
GTAAGATAGAAGAAAATCATGTATCAGCAGAGGAGCTTGGTAAGGGGATT
TCACAGGATCATCAAATGATTCTCAATTACGAGATGATTGTTTATCAGAG
TCTGGAATTTGATCTCATTGTTTATGCACCCTATCGTTCAGTTGAAGGTT
TTGTCAATGACATGGAGGAATTCTGTGGAGCAAAGGATGAACAAAATCAA
ATTCTAAAGGATTTGCAAGAAACTGCAAGGATAGAAGTTGACAAAATTAT
GCTTACTGATGCTCCACATCTATTTCCTCCCGGCCAGTTGGCACTGGCTG
CTTTACGCAGTGCAAATGAGATGCATAAAGTTCTTGACTTTGAGAGATAC
CTCAGAAGCATTCTCACACGCCAGAATTCTGAGCACACCATATCCCAGCT
TATAGAATCCCTAAATGCTATAGATACTTGGGTCAGGAAATACAAGTTCC
CCACAGAAAAGGATATGAAGCATATCAACCGGAAACTAAAATCTTGTTGG
GGGCACAGCTCGCAGGATGACAGTAAGAAGCGGGATAAGAAAAGGCACAA
ATCCCATAAAAGTTCAAACGAAATTCCGAATGGACCATCCATTGGTTAA
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protein sequence of Tc05v2_p025710.1

>Tc05v2_p025710.1 ID=Tc05v2_p025710.1|Name=Tc05v2_p025710.1|organism=Theobroma cacao|type=polypeptide|length=333bp
MADFQTSTHRAKWIFTPQGLVEKYKAANQRAIQTLEKYGTTQMEVDADGS
LSYPEPIARDNADKHSRAKPLSIEEEQFMRVFYENKLREVCSAFYFPNKI
QATALIYFKRFYLQWSVMEHHPKHIMLTCVYAACKIEENHVSAEELGKGI
SQDHQMILNYEMIVYQSLEFDLIVYAPYRSVEGFVNDMEEFCGAKDEQNQ
ILKDLQETARIEVDKIMLTDAPHLFPPGQLALAALRSANEMHKVLDFERY
LRSILTRQNSEHTISQLIESLNAIDTWVRKYKFPTEKDMKHINRKLKSCW
GHSSQDDSKKRDKKRHKSHKSSNEIPNGPSIG*
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