Tc05v2_t025490.2

Overview
NameTc05v2_t025490.2
Unique NameTc05v2_t025490.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1182
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productprobable E3 ubiquitin-protein ligase LUL4, transcript variant X1
NotePutative Probable E3 ubiquitin-protein ligase LUL2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600416
GenbankXM_018120854.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g025490Tc05v2_g025490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p025490.2Tc05v2_p025490.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto305717auto305717Theobroma cacaoexon
exon-auto305718auto305718Theobroma cacaoexon
exon-auto305719auto305719Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto305720auto305720Theobroma cacaoCDS
CDS-auto305721auto305721Theobroma cacaoCDS
CDS-auto305722auto305722Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t025490.2 ID=Tc05v2_t025490.2|Name=Tc05v2_t025490.2|organism=Theobroma cacao|type=mRNA|length=1182bp
ATGGGACATGATTTAAGCAAACTAAGAAGAACCAGTCACCGCCGTCAAAC
CCAAACCCGGATTCCTTCTCTTGTTCCATCATCATCATCTTCGTCTTCTT
CTTCTCCATCAACAGCAGCAGCCGCAGCCATAGACACTAACAATAATTCA
ACTACTAACAATACCAACTTCAATGCTGGTTCTACTCAAACCATCCCAAC
TCCTTCTTCTCCTTCTTCTGCTGCTGCTGCTTTGTCAAGCCAACCGCATG
CAAGTAGTTATGTTTTTGCAGCCAATGCACCGCACCCTTCTCCCTCATCC
AGTTCACCAAACCATTACCACCCTCCTCCTCCTCCTCCTCCTCCTTCTTC
TTCTTCTTCACTGATGGCTCCGCCATTCTTTTCGTTGGCCCCACCTCCTT
ATGTTGATCACGAAAGTGCCAAGAAGATCAAGAACGATGTCAATATTCAC
AAGGACAGTATAAGACTTTTCCTTGATGACAACAGCCTGGATTCTTACTT
GGTTTCTTTCACTTTCGATGCTCTTGTTGATGGCAGTATCACCATATTTT
ACTTTGCCAAGGAAGGGCCCAACTGCATCTTCATGCCACTGTATCCTGAA
ATATATATGCCTAAGACAATTCCATTCCAGAAAGGCTTGGCTCAGAAATT
CTGTCAACCCTCAGGAACTGGAATTGACCTTGGTTTCTTTGAATTGGGTC
TTCTTTCAAAGCCCTCAAGGAAAGAAGACATTTTCCCACTCGTTATCTCT
GCACAGGCAAGTTTGCCATCTTTCTCAGCAGGTGCAGGGCTGGATCAGCC
TCCACCAATCGTGTCTCCACATGCTCAAATCACTCAAGCTGTCCTGAAGA
AAAATAATGAGGCCCATTTTCAGGTGAAAGTAATCAGGCAAATACTGTGG
ATAGAGGGGATTCGATACGAGCTCCGTGAGATCTATGGAATTGAGAATTC
TAGTGAACAAGGTTTTGATGATAGTGAGTCAGGAAAAGCATGCGTGATTT
GCATGACTGAGCCAAAAGATACCGCTGTTTTGCCTTGTCGACATATGTGT
ATGTGCAGTGGATGTGCTAAACAATTGAGGCTTCGATCAAAGAGGTGTCC
CGTCTGTCGCCAACCCATCCAAGAACTAATAGAGATAAAGATTAGAGTAA
GAAAAAGCAAAACAAAATCTATATGTTCCTGA
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protein sequence of Tc05v2_p025490.2

>Tc05v2_p025490.2 ID=Tc05v2_p025490.2|Name=Tc05v2_p025490.2|organism=Theobroma cacao|type=polypeptide|length=394bp
MGHDLSKLRRTSHRRQTQTRIPSLVPSSSSSSSSSPSTAAAAAIDTNNNS
TTNNTNFNAGSTQTIPTPSSPSSAAAALSSQPHASSYVFAANAPHPSPSS
SSPNHYHPPPPPPPPSSSSSLMAPPFFSLAPPPYVDHESAKKIKNDVNIH
KDSIRLFLDDNSLDSYLVSFTFDALVDGSITIFYFAKEGPNCIFMPLYPE
IYMPKTIPFQKGLAQKFCQPSGTGIDLGFFELGLLSKPSRKEDIFPLVIS
AQASLPSFSAGAGLDQPPPIVSPHAQITQAVLKKNNEAHFQVKVIRQILW
IEGIRYELREIYGIENSSEQGFDDSESGKACVICMTEPKDTAVLPCRHMC
MCSGCAKQLRLRSKRCPVCRQPIQELIEIKIRVRKSKTKSICS*
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