Tc05v2_t025490.1

Overview
NameTc05v2_t025490.1
Unique NameTc05v2_t025490.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1173
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productprobable E3 ubiquitin-protein ligase LUL4, transcript variant X2
NoteProbable E3 ubiquitin-protein ligase LUL4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600416
GenbankXM_007030841.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g025490Tc05v2_g025490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p025490.1Tc05v2_p025490.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto305707auto305707Theobroma cacaoexon
exon-auto305708auto305708Theobroma cacaoexon
exon-auto305709auto305709Theobroma cacaoexon
exon-auto305710auto305710Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto305711auto305711Theobroma cacaoCDS
CDS-auto305712auto305712Theobroma cacaoCDS
CDS-auto305713auto305713Theobroma cacaoCDS
CDS-auto305714auto305714Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t025490.1 ID=Tc05v2_t025490.1|Name=Tc05v2_t025490.1|organism=Theobroma cacao|type=mRNA|length=1173bp
ATGGGACATGATTTAAGCAAACTAAGAAGAACCAGTCACCGCCGTCAAAC
CCAAACCCGGATTCCTTCTCTTGTTCCATCATCATCATCTTCGTCTTCTT
CTTCTCCATCAACAGCAGCAGCCGCAGCCATAGACACTAACAATAATTCA
ACTACTAACAATACCAACTTCAATGCTGGTTCTACTCAAACCATCCCAAC
TCCTTCTTCTCCTTCTTCTGCTGCTGCTGCTTTGTCAAGCCAACCGCATG
CAAGTAGTTATGTTTTTGCAGCCAATGCACCGCACCCTTCTCCCTCATCC
AGTTCACCAAACCATTACCACCCTCCTCCTCCTCCTCCTCCTCCTTCTTC
TTCTTCTTCACTGATGGCTCCGCCATTCTTTTCGTTGGCCCCACCTCCTT
ATGTTGATCACGAAAGTGCCAAGAAGATCAAGAACGATGTCAATATTCAC
AAGGACAGTATAAGACTTTTCCTTGATGACAACAGCCTGGATTCTTACTT
GGTTTCTTTCACTTTCGATGCTCTTGTTGATGGCAGTATCACCATATTTT
ACTTTGCCAAGGAAGGGCCCAACTGCATCTTCATGCCACTGTATCCTGAA
ATATATATGCCTAAGACAATTCCATTCCAGAAAGGCTTGGCTCAGAAATT
CTGTCAACCCTCAGGAACTGGAATTGACCTTGGTTTCTTTGAATTGGGTC
TTCTTTCAAAGCCCTCAAGGAAAGAAGACATTTTCCCACTCGTTATCTCT
GCACAGGCAAGTTTGCCATCTTTCTCAGCAGGTGCAGGGCTGGATCAGCC
TCCACCAATCGTGTCTCCACATGCTCAAATCACTCAAGCTGTCCTGAAGA
AAAATAATGAGGCCCATTTTCAGGTGAAAGTAATCAGGCAAATACTGTGG
ATAGAGGGGATTCGATACGAGCTCCGTGAGATCTATGGAATTGAGAATTC
TAGTGAACAAGGTTTTGATGATAGTGAGTCAGGAAAAGCATGCGTGATTT
GCATGACTGAGCCAAAAGATACCGCTGTTTTGCCTTGTCGACATATGTGT
ATGTGCAGTGGATGTGCTAAACAATTGAGGCTTCGATCAAAGAGGTGTCC
CGTCTGTCGCCAACCCATCCAAGAACTAATAGAGATAAAGATTAGAAATC
AACCTAAGCCAGCAGCAGTTTAG
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protein sequence of Tc05v2_p025490.1

>Tc05v2_p025490.1 ID=Tc05v2_p025490.1|Name=Tc05v2_p025490.1|organism=Theobroma cacao|type=polypeptide|length=391bp
MGHDLSKLRRTSHRRQTQTRIPSLVPSSSSSSSSSPSTAAAAAIDTNNNS
TTNNTNFNAGSTQTIPTPSSPSSAAAALSSQPHASSYVFAANAPHPSPSS
SSPNHYHPPPPPPPPSSSSSLMAPPFFSLAPPPYVDHESAKKIKNDVNIH
KDSIRLFLDDNSLDSYLVSFTFDALVDGSITIFYFAKEGPNCIFMPLYPE
IYMPKTIPFQKGLAQKFCQPSGTGIDLGFFELGLLSKPSRKEDIFPLVIS
AQASLPSFSAGAGLDQPPPIVSPHAQITQAVLKKNNEAHFQVKVIRQILW
IEGIRYELREIYGIENSSEQGFDDSESGKACVICMTEPKDTAVLPCRHMC
MCSGCAKQLRLRSKRCPVCRQPIQELIEIKIRNQPKPAAV*
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