Tc05v2_t025440.4

Overview
NameTc05v2_t025440.4
Unique NameTc05v2_t025440.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length771
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productnuclear transcription factor Y subunit C-9, transcript variant X4
NoteNuclear transcription factor Y subunit C-9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600409
GenbankXM_007030826.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g025440Tc05v2_g025440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p025440.4Tc05v2_p025440.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto305512auto305512Theobroma cacaoexon
exon-auto305513auto305513Theobroma cacaoexon
exon-auto305514auto305514Theobroma cacaoexon
exon-auto305515auto305515Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto305516auto305516Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t025440.4 ID=Tc05v2_t025440.4|Name=Tc05v2_t025440.4|organism=Theobroma cacao|type=mRNA|length=771bp
ATGGATCAGCAAGGGCATGGACAGCCCCCAGCTATGGGGATGATTGGTAG
TGGAGCTCAAGTGCCTTACGGCAGTAACCCGTATCAGAACCAAGTGGCTG
GAGGCCCAAATCCAGGGTCAGTAGTAACATCAGTTGGAGCCAGTCAGCCA
ACAGGAGCTCAACTTGCGCAACACCAACTTGCTTATCAGCAAATCCACCA
CCAGCAGCAACAGCAACTTCAGCAACAACTCCAGGCATTTTGGGCAAATC
AGTATCAAGAAATTGAGAAAGTTACTGATTTCAAGAACCATAGCCTTCCC
TTAGCCAGGATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGAT
ATCAGCTGAGGCCCCTGTCATTTTTGCCAGGGCATGTGAAATGTTCATCT
TAGAATTGACATTGCGTTCCTGGAATCACACAGAAGAGAACAAAAGGAGG
ACACTTCAGAAAAATGATATTGCAGCAGCAATTACCAGGACTGACATATT
TGATTTCTTAGTTGACATAGTTCCAAGGGAGGATTTGAAAGACGAAGTTC
TTGCATCAATTCCAAGAGGAACAATGCCTGTTGGGGGGCCTGCTGATGCG
CTGTCTTACTACATGCCTGCCCAGCATGCATCTCAGGTAGGGACTCCAGG
AATGATTATGGGGAAGCCCGTTATGGATCCTGCTATGTATGCCCAGCAGT
CTCACCCATACATGGCGCAGCAGATGTGGCCATCAGGTCCTGAACAACAG
CAGTCATCTTCTGATCATTAG
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protein sequence of Tc05v2_p025440.4

>Tc05v2_p025440.4 ID=Tc05v2_p025440.4|Name=Tc05v2_p025440.4|organism=Theobroma cacao|type=polypeptide|length=257bp
MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTSVGASQP
TGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLP
LARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRR
TLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADA
LSYYMPAQHASQVGTPGMIMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQ
QSSSDH*
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