Tc05v2_t024560.3

Overview
NameTc05v2_t024560.3
Unique NameTc05v2_t024560.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1236
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productglutamate dehydrogenase 1, transcript variant X3
NoteGlutamate dehydrogenase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600298
GenbankXM_007030661.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g024560Tc05v2_g024560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p024560.3Tc05v2_p024560.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto303327auto303327Theobroma cacaoexon
exon-auto303328auto303328Theobroma cacaoexon
exon-auto303329auto303329Theobroma cacaoexon
exon-auto303330auto303330Theobroma cacaoexon
exon-auto303331auto303331Theobroma cacaoexon
exon-auto303332auto303332Theobroma cacaoexon
exon-auto303333auto303333Theobroma cacaoexon
exon-auto303334auto303334Theobroma cacaoexon
exon-auto303335auto303335Theobroma cacaoexon
exon-auto303336auto303336Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto303337auto303337Theobroma cacaoCDS
CDS-auto303338auto303338Theobroma cacaoCDS
CDS-auto303339auto303339Theobroma cacaoCDS
CDS-auto303340auto303340Theobroma cacaoCDS
CDS-auto303341auto303341Theobroma cacaoCDS
CDS-auto303342auto303342Theobroma cacaoCDS
CDS-auto303343auto303343Theobroma cacaoCDS
CDS-auto303344auto303344Theobroma cacaoCDS
CDS-auto303345auto303345Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t024560.3 ID=Tc05v2_t024560.3|Name=Tc05v2_t024560.3|organism=Theobroma cacao|type=mRNA|length=1236bp
ATGAATGCATTAGTGGCAACCAACAGAAACTTTAAACTGGCAGCTCGGCT
TCTTGGTTTGGACTCTAAGCTTGAAAAGAGTTTGCTAATCCCTTTCAGAG
AAATTAAGGTTGAATGCACCATACCCAAAGACGATGGCACTTTGGCTTCC
TTTGTTGGGTTCAGGGTTCAGCATGACAATGCAAGAGGCCCCATGAAAGG
AGGAATCAGATATCACCCAGAGGTTGACCCTGATGAAGTGAATGCTTTAG
CACAACTAATGACATGGAAGACTGCAGTTGCCAATATCCCATATGGTGGG
GCTAAAGGTGGGATAGGATGTAATCCAGGAGAGTTAAGCATATCTGAACT
GGAACGGCTTACTCGAGTTTTCACCCAGAAGATACATGACCTGATTGGAG
TTCACACAGATGTTCCAGCACCTGATATGGGTACAGGTCCACAGACAATG
GCATGGATACTAGATGAGTACTCCAAATTCCATGGCTATTCACCTGCTGT
AGTAACTGGAAAACCAACAGATCTTGGAGGATCACTTGGCAGAGATGCAG
CTACTGGCAGAGGAGTGCTCTTTGCCACAGAAGCCCTTCTTAATGAGCAC
GGAAAGACCATCTCTGGACAAAAATTTGCAATACAGGGTTTTGGAAATGT
TGGTTCCTGGGCTGCCCAACTCATCCATGAAAAGGGTGGGAAGATTGTTG
CTGTGAGTGATATCACTGGAGCCATAAAGAACAGCAAAGGAATTGATATT
CCAAGCCTACTCAAGCATGTCAGGGCAAGCAAGGGAGTCAAAGGATTCCA
TGGTGGGGATTCTATAGATCCCAATTCAATTCTGGTTGAAGACTGCGACA
TACTCATCCCAGCGGCACTCGGTGGTGTCATCAACAGGGAAAATGCAAAT
GATATTAAAGCCAAGTTCATAATTGAAGCTGCTAACCATCCAACTGATCC
AGAGGCTGATGAGATCTTATCAAAGAAAGGTGTGATTATCCTTCCCGATA
TATATGCAAACTCAGGAGGAGTAACTGTTAGTTACTTCGAGTGGGTGCAG
AACATTCAAGGCTTCATGTGGGATGAGGAGAAGGTGAACAATGAGCTAAA
GACATACATGACCAAAGGATTCAAAGATGTGAAGGAGATGTGCAAAACCC
ACAATTGCGACCTTCGTATGGGAGCCTTTACCCTTGGAGTTAACCGTGTT
GCTCGGGCTACACTTCTGAGAGGCTGGGGAGCATAA
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protein sequence of Tc05v2_p024560.3

>Tc05v2_p024560.3 ID=Tc05v2_p024560.3|Name=Tc05v2_p024560.3|organism=Theobroma cacao|type=polypeptide|length=412bp
MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLAS
FVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG
AKGGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTM
AWILDEYSKFHGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEH
GKTISGQKFAIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAIKNSKGIDI
PSLLKHVRASKGVKGFHGGDSIDPNSILVEDCDILIPAALGGVINRENAN
DIKAKFIIEAANHPTDPEADEILSKKGVIILPDIYANSGGVTVSYFEWVQ
NIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLGVNRV
ARATLLRGWGA*
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