Tc05v2_t024560.1

Overview
NameTc05v2_t024560.1
Unique NameTc05v2_t024560.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1236
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productglutamate dehydrogenase 1, transcript variant X2
NoteGlutamate dehydrogenase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600298
GenbankXM_018121400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g024560Tc05v2_g024560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p024560.1Tc05v2_p024560.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto303283auto303283Theobroma cacaoexon
exon-auto303284auto303284Theobroma cacaoexon
exon-auto303285auto303285Theobroma cacaoexon
exon-auto303286auto303286Theobroma cacaoexon
exon-auto303287auto303287Theobroma cacaoexon
exon-auto303288auto303288Theobroma cacaoexon
exon-auto303289auto303289Theobroma cacaoexon
exon-auto303290auto303290Theobroma cacaoexon
exon-auto303291auto303291Theobroma cacaoexon
exon-auto303292auto303292Theobroma cacaoexon
exon-auto303293auto303293Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto303294auto303294Theobroma cacaoCDS
CDS-auto303295auto303295Theobroma cacaoCDS
CDS-auto303296auto303296Theobroma cacaoCDS
CDS-auto303297auto303297Theobroma cacaoCDS
CDS-auto303298auto303298Theobroma cacaoCDS
CDS-auto303299auto303299Theobroma cacaoCDS
CDS-auto303300auto303300Theobroma cacaoCDS
CDS-auto303301auto303301Theobroma cacaoCDS
CDS-auto303302auto303302Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t024560.1 ID=Tc05v2_t024560.1|Name=Tc05v2_t024560.1|organism=Theobroma cacao|type=mRNA|length=1236bp
ATGAATGCATTAGTGGCAACCAACAGAAACTTTAAACTGGCAGCTCGGCT
TCTTGGTTTGGACTCTAAGCTTGAAAAGAGTTTGCTAATCCCTTTCAGAG
AAATTAAGGTTGAATGCACCATACCCAAAGACGATGGCACTTTGGCTTCC
TTTGTTGGGTTCAGGGTTCAGCATGACAATGCAAGAGGCCCCATGAAAGG
AGGAATCAGATATCACCCAGAGGTTGACCCTGATGAAGTGAATGCTTTAG
CACAACTAATGACATGGAAGACTGCAGTTGCCAATATCCCATATGGTGGG
GCTAAAGGTGGGATAGGATGTAATCCAGGAGAGTTAAGCATATCTGAACT
GGAACGGCTTACTCGAGTTTTCACCCAGAAGATACATGACCTGATTGGAG
TTCACACAGATGTTCCAGCACCTGATATGGGTACAGGTCCACAGACAATG
GCATGGATACTAGATGAGTACTCCAAATTCCATGGCTATTCACCTGCTGT
AGTAACTGGAAAACCAACAGATCTTGGAGGATCACTTGGCAGAGATGCAG
CTACTGGCAGAGGAGTGCTCTTTGCCACAGAAGCCCTTCTTAATGAGCAC
GGAAAGACCATCTCTGGACAAAAATTTGCAATACAGGGTTTTGGAAATGT
TGGTTCCTGGGCTGCCCAACTCATCCATGAAAAGGGTGGGAAGATTGTTG
CTGTGAGTGATATCACTGGAGCCATAAAGAACAGCAAAGGAATTGATATT
CCAAGCCTACTCAAGCATGTCAGGGCAAGCAAGGGAGTCAAAGGATTCCA
TGGTGGGGATTCTATAGATCCCAATTCAATTCTGGTTGAAGACTGCGACA
TACTCATCCCAGCGGCACTCGGTGGTGTCATCAACAGGGAAAATGCAAAT
GATATTAAAGCCAAGTTCATAATTGAAGCTGCTAACCATCCAACTGATCC
AGAGGCTGATGAGATCTTATCAAAGAAAGGTGTGATTATCCTTCCCGATA
TATATGCAAACTCAGGAGGAGTAACTGTTAGTTACTTCGAGTGGGTGCAG
AACATTCAAGGCTTCATGTGGGATGAGGAGAAGGTGAACAATGAGCTAAA
GACATACATGACCAAAGGATTCAAAGATGTGAAGGAGATGTGCAAAACCC
ACAATTGCGACCTTCGTATGGGAGCCTTTACCCTTGGAGTTAACCGTGTT
GCTCGGGCTACACTTCTGAGAGGCTGGGGAGCATAA
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protein sequence of Tc05v2_p024560.1

>Tc05v2_p024560.1 ID=Tc05v2_p024560.1|Name=Tc05v2_p024560.1|organism=Theobroma cacao|type=polypeptide|length=412bp
MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLAS
FVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG
AKGGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTM
AWILDEYSKFHGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEH
GKTISGQKFAIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAIKNSKGIDI
PSLLKHVRASKGVKGFHGGDSIDPNSILVEDCDILIPAALGGVINRENAN
DIKAKFIIEAANHPTDPEADEILSKKGVIILPDIYANSGGVTVSYFEWVQ
NIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLGVNRV
ARATLLRGWGA*
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