Tc05v2_t024120.2

Overview
NameTc05v2_t024120.2
Unique NameTc05v2_t024120.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length975
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 23 ESTs, 75 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcysteine synthase, transcript variant X2
NoteCysteine synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600255
GenbankXM_007030588.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g024120Tc05v2_g024120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p024120.2Tc05v2_p024120.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto302239auto302239Theobroma cacaoexon
exon-auto302240auto302240Theobroma cacaoexon
exon-auto302241auto302241Theobroma cacaoexon
exon-auto302242auto302242Theobroma cacaoexon
exon-auto302243auto302243Theobroma cacaoexon
exon-auto302244auto302244Theobroma cacaoexon
exon-auto302245auto302245Theobroma cacaoexon
exon-auto302246auto302246Theobroma cacaoexon
exon-auto302247auto302247Theobroma cacaoexon
exon-auto302248auto302248Theobroma cacaoexon
exon-auto302249auto302249Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto302250auto302250Theobroma cacaoCDS
CDS-auto302251auto302251Theobroma cacaoCDS
CDS-auto302252auto302252Theobroma cacaoCDS
CDS-auto302253auto302253Theobroma cacaoCDS
CDS-auto302254auto302254Theobroma cacaoCDS
CDS-auto302255auto302255Theobroma cacaoCDS
CDS-auto302256auto302256Theobroma cacaoCDS
CDS-auto302257auto302257Theobroma cacaoCDS
CDS-auto302258auto302258Theobroma cacaoCDS
CDS-auto302259auto302259Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t024120.2 ID=Tc05v2_t024120.2|Name=Tc05v2_t024120.2|organism=Theobroma cacao|type=mRNA|length=975bp
ATGGAGGAGAAGAGTTTAATTGCCAAAGATGTTACTGAATTGGTTGGTAA
AACGCCATTGGTATATCTGAACAATGTTGTAGATGGCTGCGTGGCTCGAA
TTGCTGCAAAATTGGAGGCGATGGAACCCTGCTCCAGTGTCAAGGACAGG
ATTGGGTATAGTATGATTGCAGATGCAGAGGAGAAGGGTCTCATTAAACC
GGGTGAGAGTGTCCTTATCGAGCCAACCAGTGGTAATACCGGAATAGGAT
TGGCATTTATGGCAGCTGCTAAGGGTTATAGACTCATAATTACCATGCCT
TCTTCAATGAGTTTAGAAAGGAGAATGGTCCTCCGAGCTTTTGGAGCTGA
GCTGGTTCTTACAGACCCAGCCCGGGGCATGAAAGGGGCTGTTCAGAAGG
CTGAGGAAATTATGGAAAAGACTCCTAATTCTTACATACTTCAGCAATTT
GAAAACCCTGCCAACCCAAAGATCCATTATGAGGCAACTGGACCAGAAAT
ATGGAAAGGCACTGGAGGGAAGGTAGATTTTCTTGTCTCTGGGATTGGGA
CTGGAGGTACTGTAACAGGAGCAGGGAAGTATCTCAGAGAGCAGAATTCT
AATGTTAAGCTAATTGGTGTGGAACCAGTTGAAAGTGCAGTGCTATCTGG
AGGGAAACCTGGACCACATAAGATCCAAGGAATTGGTGCTGGCTTCATCC
CTGGGGTTTTAGAAGTCAACTTACTTGATGAAGTTGTTCAAGTATCAAGT
GAAGAAGCTATTGAAACAGCAAGGCAACTTGCTCTGAAAGAAGGATTGTT
GGTAGGTATATCATCTGGTGCAGCTGCTGCTGCTGCAATTAATATAGCCA
AGAGGCCAGAAAATGCCGGGAAGCTCATTGTTGTGGTCTTCCCTAGCTTT
GGAGAGCGTTATCTCTCTTCCGTGCTGTTCGAGTCTGTGAAGCGGGAAGC
GGAGAATATGGTTTTCGAGCCTTGA
back to top

protein sequence of Tc05v2_p024120.2

>Tc05v2_p024120.2 ID=Tc05v2_p024120.2|Name=Tc05v2_p024120.2|organism=Theobroma cacao|type=polypeptide|length=325bp
MEEKSLIAKDVTELVGKTPLVYLNNVVDGCVARIAAKLEAMEPCSSVKDR
IGYSMIADAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP
SSMSLERRMVLRAFGAELVLTDPARGMKGAVQKAEEIMEKTPNSYILQQF
ENPANPKIHYEATGPEIWKGTGGKVDFLVSGIGTGGTVTGAGKYLREQNS
NVKLIGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLEVNLLDEVVQVSS
EEAIETARQLALKEGLLVGISSGAAAAAAINIAKRPENAGKLIVVVFPSF
GERYLSSVLFESVKREAENMVFEP*
back to top