Tc05v2_t024120.1

Overview
NameTc05v2_t024120.1
Unique NameTc05v2_t024120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length975
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 29 ESTs, 75 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcysteine synthase, transcript variant X1
NoteCysteine synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600255
GenbankXM_007030587.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g024120Tc05v2_g024120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p024120.1Tc05v2_p024120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto302216auto302216Theobroma cacaoexon
exon-auto302217auto302217Theobroma cacaoexon
exon-auto302218auto302218Theobroma cacaoexon
exon-auto302219auto302219Theobroma cacaoexon
exon-auto302220auto302220Theobroma cacaoexon
exon-auto302221auto302221Theobroma cacaoexon
exon-auto302222auto302222Theobroma cacaoexon
exon-auto302223auto302223Theobroma cacaoexon
exon-auto302224auto302224Theobroma cacaoexon
exon-auto302225auto302225Theobroma cacaoexon
exon-auto302226auto302226Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto302227auto302227Theobroma cacaoCDS
CDS-auto302228auto302228Theobroma cacaoCDS
CDS-auto302229auto302229Theobroma cacaoCDS
CDS-auto302230auto302230Theobroma cacaoCDS
CDS-auto302231auto302231Theobroma cacaoCDS
CDS-auto302232auto302232Theobroma cacaoCDS
CDS-auto302233auto302233Theobroma cacaoCDS
CDS-auto302234auto302234Theobroma cacaoCDS
CDS-auto302235auto302235Theobroma cacaoCDS
CDS-auto302236auto302236Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t024120.1 ID=Tc05v2_t024120.1|Name=Tc05v2_t024120.1|organism=Theobroma cacao|type=mRNA|length=975bp
ATGGAGGAGAAGAGTTTAATTGCCAAAGATGTTACTGAATTGGTTGGTAA
AACGCCATTGGTATATCTGAACAATGTTGTAGATGGCTGCGTGGCTCGAA
TTGCTGCAAAATTGGAGGCGATGGAACCCTGCTCCAGTGTCAAGGACAGG
ATTGGGTATAGTATGATTGCAGATGCAGAGGAGAAGGGTCTCATTAAACC
GGGTGAGAGTGTCCTTATCGAGCCAACCAGTGGTAATACCGGAATAGGAT
TGGCATTTATGGCAGCTGCTAAGGGTTATAGACTCATAATTACCATGCCT
TCTTCAATGAGTTTAGAAAGGAGAATGGTCCTCCGAGCTTTTGGAGCTGA
GCTGGTTCTTACAGACCCAGCCCGGGGCATGAAAGGGGCTGTTCAGAAGG
CTGAGGAAATTATGGAAAAGACTCCTAATTCTTACATACTTCAGCAATTT
GAAAACCCTGCCAACCCAAAGATCCATTATGAGGCAACTGGACCAGAAAT
ATGGAAAGGCACTGGAGGGAAGGTAGATTTTCTTGTCTCTGGGATTGGGA
CTGGAGGTACTGTAACAGGAGCAGGGAAGTATCTCAGAGAGCAGAATTCT
AATGTTAAGCTAATTGGTGTGGAACCAGTTGAAAGTGCAGTGCTATCTGG
AGGGAAACCTGGACCACATAAGATCCAAGGAATTGGTGCTGGCTTCATCC
CTGGGGTTTTAGAAGTCAACTTACTTGATGAAGTTGTTCAAGTATCAAGT
GAAGAAGCTATTGAAACAGCAAGGCAACTTGCTCTGAAAGAAGGATTGTT
GGTAGGTATATCATCTGGTGCAGCTGCTGCTGCTGCAATTAATATAGCCA
AGAGGCCAGAAAATGCCGGGAAGCTCATTGTTGTGGTCTTCCCTAGCTTT
GGAGAGCGTTATCTCTCTTCCGTGCTGTTCGAGTCTGTGAAGCGGGAAGC
GGAGAATATGGTTTTCGAGCCTTGA
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protein sequence of Tc05v2_p024120.1

>Tc05v2_p024120.1 ID=Tc05v2_p024120.1|Name=Tc05v2_p024120.1|organism=Theobroma cacao|type=polypeptide|length=325bp
MEEKSLIAKDVTELVGKTPLVYLNNVVDGCVARIAAKLEAMEPCSSVKDR
IGYSMIADAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP
SSMSLERRMVLRAFGAELVLTDPARGMKGAVQKAEEIMEKTPNSYILQQF
ENPANPKIHYEATGPEIWKGTGGKVDFLVSGIGTGGTVTGAGKYLREQNS
NVKLIGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLEVNLLDEVVQVSS
EEAIETARQLALKEGLLVGISSGAAAAAAINIAKRPENAGKLIVVVFPSF
GERYLSSVLFESVKREAENMVFEP*
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