Tc05v2_t023890.1

Overview
NameTc05v2_t023890.1
Unique NameTc05v2_t023890.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1233
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 17 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
Productornithine decarboxylase
NoteOrnithine decarboxylase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600233
GenbankXM_018120827.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g023890Tc05v2_g023890Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p023890.1Tc05v2_p023890.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto301766auto301766Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto301767auto301767Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t023890.1 ID=Tc05v2_t023890.1|Name=Tc05v2_t023890.1|organism=Theobroma cacao|type=mRNA|length=1233bp
ATGGTTGGTCCAGCAATAGTGACAGAAAAGAGAGTTGCAGCAACTCCCTC
ATCAAAAGATGAGTTGATTGCTTTCATTCAATCGGTCATTTTGAATGAAC
AGCAAGAAGAAATGGGGCCATTTTACGTGCTGGATTTGGGTGTTGTCAGG
TCCCTCTTGGACACATGGACTTTTAACCTTCCCATGGTTCAACCATTCTA
TGCTGTCAAGTGCAACCCCAACCCTGCTTTCCTCAAAGAAATGGCAGCTC
TTGGCACCAGCTTTGATTGTGCAAGCCGTGCTGAGATTCAAACCATTTTG
TCTCTAGGAGTTTCACCTGATCGAATCGTTTTTGCAAACACATGCAAACC
TGAGTCTCACATTAAGTATGCTGCTAAAGTTGGTGTTAACTTGGCTACTT
TTGATTCAAAATGTGAACTTGAGAAGATTAAAAAATGGCACCCAAAATGT
GCCCTGTTGATGCGAATCCAAGTCCCGGAAACCAGTGGTGCAGCATTTCT
GTTCGGTTCCAAATTCGGTGCGCTCCCTGAGGAAATCGTTCCTCTTCTCC
AAGCTGCTCAAGCTGCAGAGCTCAATGTTGTTGGTGTCTCATTCCATATT
GGTAGTAGAGCCATTAACTACCATGCATTCGAAGAAGCAATATTAGCAGC
TAAAACAACATTTGAAACAGCAGCTCAACTTGGCCTTCCTAAAATGCATA
TTATAAACATTGGTGGAGGTTTCACATCCGGTCCAAAGTTTACTGAAGCA
GCCTCAGCCGTGAAAGTTGCTCTGCAAAAGTATTTTCCTACCGGGCCTAC
TTCTGGCTTAAAAATTATGGCAGAACCTGGTCGTTTCTTTGCTAACGAGC
CTTTCACATTAGCAACAAGCATTTTAGGGAAGCGAATCAGGAATGAGATT
AAAGAGTATTGGATTAACGATGGGATGTCGGGGTCTATGAACTATTTGAA
GTATGACCATGATGATGTGATTTGCACTCCTCTTGCCAACTATGGCAACA
ACGACGTCATAACACGCAAAGGGCTTAAGACATCCGACTCCACAGTTTTT
GGACCAACATGTGATCCGGCTGATACTGTTTTGGAGGGTTACCCGTTGCC
AGATCTACAAGTTAATGATTGGTTGGTCTTCCACAACATGGGCGCTTATA
CCTCTTCTCGTGGGAATGATTTCAATGGGTTCGAAACATCAGCCATTCCA
ACCTACCTTGCAAACTCTGATAAAATTAGTTAA
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protein sequence of Tc05v2_p023890.1

>Tc05v2_p023890.1 ID=Tc05v2_p023890.1|Name=Tc05v2_p023890.1|organism=Theobroma cacao|type=polypeptide|length=411bp
MVGPAIVTEKRVAATPSSKDELIAFIQSVILNEQQEEMGPFYVLDLGVVR
SLLDTWTFNLPMVQPFYAVKCNPNPAFLKEMAALGTSFDCASRAEIQTIL
SLGVSPDRIVFANTCKPESHIKYAAKVGVNLATFDSKCELEKIKKWHPKC
ALLMRIQVPETSGAAFLFGSKFGALPEEIVPLLQAAQAAELNVVGVSFHI
GSRAINYHAFEEAILAAKTTFETAAQLGLPKMHIINIGGGFTSGPKFTEA
ASAVKVALQKYFPTGPTSGLKIMAEPGRFFANEPFTLATSILGKRIRNEI
KEYWINDGMSGSMNYLKYDHDDVICTPLANYGNNDVITRKGLKTSDSTVF
GPTCDPADTVLEGYPLPDLQVNDWLVFHNMGAYTSSRGNDFNGFETSAIP
TYLANSDKIS*
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