Tc05v2_t023460.2

Overview
NameTc05v2_t023460.2
Unique NameTc05v2_t023460.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length579
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin-responsive protein IAA4, transcript variant X1
NoteAuxin-induced protein 22D
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600189
GenbankXM_007030506.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g023460Tc05v2_g023460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p023460.2Tc05v2_p023460.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto301105auto301105Theobroma cacaoexon
exon-auto301106auto301106Theobroma cacaoexon
exon-auto301107auto301107Theobroma cacaoexon
exon-auto301108auto301108Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto301109auto301109Theobroma cacaoCDS
CDS-auto301110auto301110Theobroma cacaoCDS
CDS-auto301111auto301111Theobroma cacaoCDS
CDS-auto301112auto301112Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t023460.2 ID=Tc05v2_t023460.2|Name=Tc05v2_t023460.2|organism=Theobroma cacao|type=mRNA|length=579bp
ATGGCATTTGAGAAAGATCTTAACCTTGATGCTACCGCGCTCCGACTAGG
CCTGCCGGGCACCTCTGAGGAGCAAACATCTGCAAGTGGTAAGAGTAACA
AAAGAGCCTTGCCTGATATGAATGAAGAATCTGTTTCTGGTGACAATTCT
AATGTGGCAGATGCTAGGAAATGTGACCAGGAAACTGCTCCACCATCCAA
GGCACAAGTTGTAGGGTGGCCACCAATCCGATCTTACAGGAAAAACTGCC
TCCAACCAAAGAAAACTGAGGCTGAAGCTGCTGGGATCTATGTCAAAGTT
AGCATGGATGGAGCTCCTTATCTTAGAAAGATAGATTTGAAGGTGTACAA
GGGCTACCCAGAATTGCTCAAGGCCCTCGAAGACATGTTCAAGTTCAAAG
TTGGTGAATATTCAGAGAGGGAAGGATACAATGGATCAGAATTTGTACCC
ACCTATGAAGATAAAGATGGTGACTGGATGTTGGTTGGAGATGTTCCATG
GGAAATGTTCACAAATTCCTGCAAAAGGCTGAGGATAATGAAAGGATCAG
AAGCAAGAGGGTTGGGTTGTGTTGTATGA
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protein sequence of Tc05v2_p023460.2

>Tc05v2_p023460.2 ID=Tc05v2_p023460.2|Name=Tc05v2_p023460.2|organism=Theobroma cacao|type=polypeptide|length=193bp
MAFEKDLNLDATALRLGLPGTSEEQTSASGKSNKRALPDMNEESVSGDNS
NVADARKCDQETAPPSKAQVVGWPPIRSYRKNCLQPKKTEAEAAGIYVKV
SMDGAPYLRKIDLKVYKGYPELLKALEDMFKFKVGEYSEREGYNGSEFVP
TYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKGSEARGLGCVV*
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