Tc05v2_t022960.3

Overview
NameTc05v2_t022960.3
Unique NameTc05v2_t022960.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1896
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productprotein EIN4, transcript variant X3
NoteProtein EIN4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600122
GenbankXM_007030424.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022960Tc05v2_g022960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022960.3Tc05v2_p022960.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto300411auto300411Theobroma cacaoexon
exon-auto300412auto300412Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto300413auto300413Theobroma cacaoCDS
CDS-auto300414auto300414Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022960.3 ID=Tc05v2_t022960.3|Name=Tc05v2_t022960.3|organism=Theobroma cacao|type=mRNA|length=1896bp
ATGTTAAGAGCATTAGCTCAGGGCTTGTTGATTTCTTTATTCGTGATCTC
GGTTTCTGCCACTGATAATGAGTTTCCAAATTGTAATTGTGATGATGAGG
GCTTGTGGAGTATACATAGCATTTTGGAGTGCCAGAAGGTGAGTGATTTC
TTGATTGCTGTGGCATATTTTTCGATACCTATTGAACTGCTTTACTTCAT
TAGTTGTTCGAGCGTCCCCTTCAAATGGGTCCTGCTTCAGTTTATAGCCT
TTATAGTGCTTTGTGGGTTGACTCATCTTCTCAACGGATGGACTTATTAT
GGTCCCCACTCATTCCAGTTGATGCTATCTGTCACCATTGCCAAATTCCT
TACAGCCCTTGTTTCATGTGCCACTGCAATAACACTTTTAACTCTGATCC
CTCTCTTACTCAAAGTGAAAGTCAGGGAGCTTTTCTTGAGGCAAAATGTA
TTGGAGTTAGATCAAGAGGTTGGGATGATGAAGAAGAAGAAGGAAGCCAG
TTCACATGTTCGAATGTTAACACATGAAATCAGGAAATCCCTGGATAAGC
ATACCATATTGTACACCACTTTGGTTGAGCTTTCGAAGACTTTGGATTTG
TACAACTGCGCAGTGTGGATGCCAAATGAGAATGGATCGCTGATGAATTT
GACTCATGAGTTGAAAGCAAGTTCTTCGAGGAGCTTTCATTCCATCCCAA
CTAATGATCCTGATGTGATGGAGATAAAAGAGAGTGAAGGAGTGAGAATC
CTGAGGCCAGACTCAGCACTTGGGCTTGCAAGTGGTAGCGGATCAGATGA
GGCAGGTGCTGTTGCAGCAATTAGGATGCCAATGCTTCACGGTTCTAATT
TTAAAGGGGGAACACCAGAATCAGTAGAGACTTGCTATGCCATTCTGGTC
TTGGTTCTTCCAAGTTCGAACCAGGGTTGGAGCGAGCCGGAAATGGAGAT
TGTTGAAGTGGTTGCTGATCAGGTAGCTGTAGCTCTGTCCCACGCTGCAG
TTCTTGAAGAATCTCAGCTAATGAGAGAAAGACTGAGTCAGCAAAATTGT
GTGTTACAGCAGGCAAGAAAGAATGCAATGATGGCCAGCCAAGCAAGGAA
CTCTTTTCAGAAAGTGATGAGCCATGGTATGAAGAGACCAATGCACTCAA
TTTTGGGCTTACTTTCAGTGTTTCAAGAAGAAAAAATGAATTTCAACCAG
AAGATTGTTATTGACACATTGGTTAAAACAAGCAGTGTTCTCTCAACTTT
GATAAATGATGTGATGGAGATTTCAGCAAAAGATAATGGAAGATTCCCGC
TAGATATGAGACCTTTTAGCTTACATTCCATGATCAAAGAAGCTTCTTGC
CTTGCCAAGTGTTTGTCTGTCTATAAAGGATTTGGTTTTGAAGTTGGTGT
TCAGAGCTCTTTGCCTCACCAAGTGATTGGTGATGAGAAAAGGACTTTTC
AAGTAATTTTGCATATGGTTGGCTATCTACTGGACGTCAATAACGGAGGA
GGAACTGTCTTATTTCGGGTTTTATCAGATGTCAGTAGCCAGGATAAGAA
TGACAAAATAAATGCATGGAGATCAAACACACAAGATAATTACCTGTACT
TAAGGATTGAAATTGGTATTCGTGGGGGCAGTTCTCAGGCAGATGAATCA
GTCTCAACCAAACATTCTTCTGGTGGGAGGCATAACGATGATGAAATTAA
GGAGAGCCTGAATTTCAATATGTGTAAAAAGCTTGTGCAGGGCATTTGCA
GCAAGCTGCCGGTTTCATTGGGCTTCTTTAATCTGGTTTGGGCAATTTTA
CATATTTTGGTGTTTGGATACAAAAAGCAAGTGAAAAAACAGTTGCTTAT
GCCTCTAAGCTTTTGGGGAGAAATATTTTCATATGAAGGAGTCTGA
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protein sequence of Tc05v2_p022960.3

>Tc05v2_p022960.3 ID=Tc05v2_p022960.3|Name=Tc05v2_p022960.3|organism=Theobroma cacao|type=polypeptide|length=632bp
MLRALAQGLLISLFVISVSATDNEFPNCNCDDEGLWSIHSILECQKVSDF
LIAVAYFSIPIELLYFISCSSVPFKWVLLQFIAFIVLCGLTHLLNGWTYY
GPHSFQLMLSVTIAKFLTALVSCATAITLLTLIPLLLKVKVRELFLRQNV
LELDQEVGMMKKKKEASSHVRMLTHEIRKSLDKHTILYTTLVELSKTLDL
YNCAVWMPNENGSLMNLTHELKASSSRSFHSIPTNDPDVMEIKESEGVRI
LRPDSALGLASGSGSDEAGAVAAIRMPMLHGSNFKGGTPESVETCYAILV
LVLPSSNQGWSEPEMEIVEVVADQVAVALSHAAVLEESQLMRERLSQQNC
VLQQARKNAMMASQARNSFQKVMSHGMKRPMHSILGLLSVFQEEKMNFNQ
KIVIDTLVKTSSVLSTLINDVMEISAKDNGRFPLDMRPFSLHSMIKEASC
LAKCLSVYKGFGFEVGVQSSLPHQVIGDEKRTFQVILHMVGYLLDVNNGG
GTVLFRVLSDVSSQDKNDKINAWRSNTQDNYLYLRIEIGIRGGSSQADES
VSTKHSSGGRHNDDEIKESLNFNMCKKLVQGICSKLPVSLGFFNLVWAIL
HILVFGYKKQVKKQLLMPLSFWGEIFSYEGV*
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