Tc05v2_t022960.2

Overview
NameTc05v2_t022960.2
Unique NameTc05v2_t022960.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2283
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprotein EIN4, transcript variant X1
NoteProtein EIN4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600122
GenbankXM_007030423.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022960Tc05v2_g022960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022960.2Tc05v2_p022960.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto300405auto300405Theobroma cacaoexon
exon-auto300406auto300406Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto300407auto300407Theobroma cacaoCDS
CDS-auto300408auto300408Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022960.2 ID=Tc05v2_t022960.2|Name=Tc05v2_t022960.2|organism=Theobroma cacao|type=mRNA|length=2283bp
ATGTTAAGAGCATTAGCTCAGGGCTTGTTGATTTCTTTATTCGTGATCTC
GGTTTCTGCCACTGATAATGAGTTTCCAAATTGTAATTGTGATGATGAGG
GCTTGTGGAGTATACATAGCATTTTGGAGTGCCAGAAGGTGAGTGATTTC
TTGATTGCTGTGGCATATTTTTCGATACCTATTGAACTGCTTTACTTCAT
TAGTTGTTCGAGCGTCCCCTTCAAATGGGTCCTGCTTCAGTTTATAGCCT
TTATAGTGCTTTGTGGGTTGACTCATCTTCTCAACGGATGGACTTATTAT
GGTCCCCACTCATTCCAGTTGATGCTATCTGTCACCATTGCCAAATTCCT
TACAGCCCTTGTTTCATGTGCCACTGCAATAACACTTTTAACTCTGATCC
CTCTCTTACTCAAAGTGAAAGTCAGGGAGCTTTTCTTGAGGCAAAATGTA
TTGGAGTTAGATCAAGAGGTTGGGATGATGAAGAAGAAGAAGGAAGCCAG
TTCACATGTTCGAATGTTAACACATGAAATCAGGAAATCCCTGGATAAGC
ATACCATATTGTACACCACTTTGGTTGAGCTTTCGAAGACTTTGGATTTG
TACAACTGCGCAGTGTGGATGCCAAATGAGAATGGATCGCTGATGAATTT
GACTCATGAGTTGAAAGCAAGTTCTTCGAGGAGCTTTCATTCCATCCCAA
CTAATGATCCTGATGTGATGGAGATAAAAGAGAGTGAAGGAGTGAGAATC
CTGAGGCCAGACTCAGCACTTGGGCTTGCAAGTGGTAGCGGATCAGATGA
GGCAGGTGCTGTTGCAGCAATTAGGATGCCAATGCTTCACGGTTCTAATT
TTAAAGGGGGAACACCAGAATCAGTAGAGACTTGCTATGCCATTCTGGTC
TTGGTTCTTCCAAGTTCGAACCAGGGTTGGAGCGAGCCGGAAATGGAGAT
TGTTGAAGTGGTTGCTGATCAGGTAGCTGTAGCTCTGTCCCACGCTGCAG
TTCTTGAAGAATCTCAGCTAATGAGAGAAAGACTGAGTCAGCAAAATTGT
GTGTTACAGCAGGCAAGAAAGAATGCAATGATGGCCAGCCAAGCAAGGAA
CTCTTTTCAGAAAGTGATGAGCCATGGTATGAAGAGACCAATGCACTCAA
TTTTGGGCTTACTTTCAGTGTTTCAAGAAGAAAAAATGAATTTCAACCAG
AAGATTGTTATTGACACATTGGTTAAAACAAGCAGTGTTCTCTCAACTTT
GATAAATGATGTGATGGAGATTTCAGCAAAAGATAATGGAAGATTCCCGC
TAGATATGAGACCTTTTAGCTTACATTCCATGATCAAAGAAGCTTCTTGC
CTTGCCAAGTGTTTGTCTGTCTATAAAGGATTTGGTTTTGAAGTTGGTGT
TCAGAGCTCTTTGCCTCACCAAGTGATTGGTGATGAGAAAAGGACTTTTC
AAGTAATTTTGCATATGGTTGGCTATCTACTGGACGTCAATAACGGAGGA
GGAACTGTCTTATTTCGGGTTTTATCAGATGTCAGTAGCCAGGATAAGAA
TGACAAAATAAATGCATGGAGATCAAACACACAAGATAATTACCTGTACT
TAAGGATTGAAATTGGTATTCGTGGGGGCAGTTCTCAGGCAGATGAATCA
GTCTCAACCAAACATTCTTCTGGTGGGAGGCATAACGATGATGAAATTAA
GGAGAGCCTGAATTTCAATATGTGTAAAAAGCTTGTGCAGATGATGCAAG
GTAATATCTGGGTATCCACAAACTCTCTTGGGTTTGCACAGAGTATGACC
CTTCTTCTCAGGTTTCAAATCCAACCATATATCCAAAGAACCACGTTTGC
ATCTGTGAACTCCACCGAGCAACCAAATTTCAACTCCAGGTTCAGAGGTC
TTCGAGTATTACTAGCTGATGATGATGATATAAACAGGACTGTGACCAAG
AAGCTGTTAGAGAAGCTTGGTTGTGAAGTGACTTCTGTTTCTTCTGGATT
TGAATGTCTTAGTGCAGTCAGCCATGCTGAAAATTCGTTCAGAATTGTTG
TTTTGGATCTTCACATGCCTGAAATGGATGGATTTGAAGTGGCAATGAGA
ATCCGTAAGTATCGCAGCCATAATTGGCCATTGATTATAGCCTTGACAGC
TAGTGCTGAGGATAATGTGCGTGAGAGATGCCTACAAATGGGAATGAATG
CAGTTATTCAGAAACCAGTTGTATTGCAAGGGATGGCAGATGAGATTCAA
AGAGTTCTGCAACGGGCAGGGGAAGGGATTTGA
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protein sequence of Tc05v2_p022960.2

>Tc05v2_p022960.2 ID=Tc05v2_p022960.2|Name=Tc05v2_p022960.2|organism=Theobroma cacao|type=polypeptide|length=761bp
MLRALAQGLLISLFVISVSATDNEFPNCNCDDEGLWSIHSILECQKVSDF
LIAVAYFSIPIELLYFISCSSVPFKWVLLQFIAFIVLCGLTHLLNGWTYY
GPHSFQLMLSVTIAKFLTALVSCATAITLLTLIPLLLKVKVRELFLRQNV
LELDQEVGMMKKKKEASSHVRMLTHEIRKSLDKHTILYTTLVELSKTLDL
YNCAVWMPNENGSLMNLTHELKASSSRSFHSIPTNDPDVMEIKESEGVRI
LRPDSALGLASGSGSDEAGAVAAIRMPMLHGSNFKGGTPESVETCYAILV
LVLPSSNQGWSEPEMEIVEVVADQVAVALSHAAVLEESQLMRERLSQQNC
VLQQARKNAMMASQARNSFQKVMSHGMKRPMHSILGLLSVFQEEKMNFNQ
KIVIDTLVKTSSVLSTLINDVMEISAKDNGRFPLDMRPFSLHSMIKEASC
LAKCLSVYKGFGFEVGVQSSLPHQVIGDEKRTFQVILHMVGYLLDVNNGG
GTVLFRVLSDVSSQDKNDKINAWRSNTQDNYLYLRIEIGIRGGSSQADES
VSTKHSSGGRHNDDEIKESLNFNMCKKLVQMMQGNIWVSTNSLGFAQSMT
LLLRFQIQPYIQRTTFASVNSTEQPNFNSRFRGLRVLLADDDDINRTVTK
KLLEKLGCEVTSVSSGFECLSAVSHAENSFRIVVLDLHMPEMDGFEVAMR
IRKYRSHNWPLIIALTASAEDNVRERCLQMGMNAVIQKPVVLQGMADEIQ
RVLQRAGEGI*
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