Tc05v2_t022680.1

Overview
NameTc05v2_t022680.1
Unique NameTc05v2_t022680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1077
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprobable low-specificity L-threonine aldolase 1, transcript variant X1
NoteProbable low-specificity L-threonine aldolase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600075
GenbankXM_007030359.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022680Tc05v2_g022680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022680.1Tc05v2_p022680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto299955auto299955Theobroma cacaoexon
exon-auto299956auto299956Theobroma cacaoexon
exon-auto299957auto299957Theobroma cacaoexon
exon-auto299958auto299958Theobroma cacaoexon
exon-auto299959auto299959Theobroma cacaoexon
exon-auto299960auto299960Theobroma cacaoexon
exon-auto299961auto299961Theobroma cacaoexon
exon-auto299962auto299962Theobroma cacaoexon
exon-auto299963auto299963Theobroma cacaoexon
exon-auto299964auto299964Theobroma cacaoexon
exon-auto299965auto299965Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto299966auto299966Theobroma cacaoCDS
CDS-auto299967auto299967Theobroma cacaoCDS
CDS-auto299968auto299968Theobroma cacaoCDS
CDS-auto299969auto299969Theobroma cacaoCDS
CDS-auto299970auto299970Theobroma cacaoCDS
CDS-auto299971auto299971Theobroma cacaoCDS
CDS-auto299972auto299972Theobroma cacaoCDS
CDS-auto299973auto299973Theobroma cacaoCDS
CDS-auto299974auto299974Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022680.1 ID=Tc05v2_t022680.1|Name=Tc05v2_t022680.1|organism=Theobroma cacao|type=mRNA|length=1077bp
ATGGTGACCAGAATGGTGGATCTTCGATCTGATACAGTCACAAAACCAAC
TGAAGCAATGAGGGCTGCTATGGTAACTGCTGAAGTTGATGATGATGTTT
TGGGTGCTGACCCGACTGCCTTTCAGTTAGAATCAGAGGTGGCAAAGATC
ATGGGCAAGGAAGCTGGTCTATTTGTCCCATCAGGCACTATGGGTAACCT
CATCAGTGTTCTTGTTCATTGTGATATAAGGGGAAGTGAAGTCATTCTTG
GAGACAATTCGCATATCCATATTTATGAGAATGGTGGGATTTCAACAATC
GGAGGTGTACATCCGAGGCCAGTGAAGAATAATGAAGATGGAACAATGGA
CATCAATTTGATTGAAGCCGCCATTAGAGACCCAAGAGGAGAGCTAGTGT
ACCCAACTACAAGGCTGATTTGCTTGGAAAATTCGCATGCGAACTCTGGT
GGTAGATGCTTGTCTGTGGCATACACAGACAGAGTTGGTGAGCTAGCCAC
AAAGCATGGTCTGAAGCTTCACATTGATGGGGCTCGCATTTTCAATGCAT
CTGTAGCACTTGGAGTTCCTGTTCACAGGCTTGTACAAGCTGCTGATTCA
GTCTCGGTATGTCTATCAAAAGGTCTGGGTGCTCCAGTTGGATCAGTCAT
TGTTGGTTCCAAAAGCTTTATTACCAAGGCTAGAAGACTTCGGAAAACCT
TAGGTGGTGGGATGAGGCAGGTTGGTTTTATTTGTGCTGCTGCTTTTGTT
GCTTTGCAAGAGAATGTTGGAAAGCTTGAGGGTGATCATAAGAAGGCAAA
GGTGTTAGCAGAGGGGCTAAATCAAATTAAAGGTCTAAGAGTGGATGTTG
CTGCTGTGCAAACCAATATCATATATTTTGACATAGCGGAGGGATCAAAA
CTCACAGCAGAGAAACTATACAAGAACTTGGAGGAACATGGTGTCCTTGT
GATGCCAGAGGGCCCAGCCAGGATGAGAATTGTCCTTCACCACCAAATTT
CATCAAGTGATGTGCAATACACTTTGTCATGCTTTCAGCAAGCTTTAACT
GGAGTGCAAGAAGAAAATGGAAACTAA
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protein sequence of Tc05v2_p022680.1

>Tc05v2_p022680.1 ID=Tc05v2_p022680.1|Name=Tc05v2_p022680.1|organism=Theobroma cacao|type=polypeptide|length=359bp
MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLESEVAKI
MGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTI
GGVHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSG
GRCLSVAYTDRVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADS
VSVCLSKGLGAPVGSVIVGSKSFITKARRLRKTLGGGMRQVGFICAAAFV
ALQENVGKLEGDHKKAKVLAEGLNQIKGLRVDVAAVQTNIIYFDIAEGSK
LTAEKLYKNLEEHGVLVMPEGPARMRIVLHHQISSSDVQYTLSCFQQALT
GVQEENGN*
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