Tc05v2_t022600.1

Overview
NameTc05v2_t022600.1
Unique NameTc05v2_t022600.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1398
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 72 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productcasein kinase I, transcript variant X1
NoteCasein kinase 1-like protein 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600067
GenbankXM_018121908.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022600Tc05v2_g022600Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022600.1Tc05v2_p022600.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto299530auto299530Theobroma cacaoexon
exon-auto299531auto299531Theobroma cacaoexon
exon-auto299532auto299532Theobroma cacaoexon
exon-auto299533auto299533Theobroma cacaoexon
exon-auto299534auto299534Theobroma cacaoexon
exon-auto299535auto299535Theobroma cacaoexon
exon-auto299536auto299536Theobroma cacaoexon
exon-auto299537auto299537Theobroma cacaoexon
exon-auto299538auto299538Theobroma cacaoexon
exon-auto299539auto299539Theobroma cacaoexon
exon-auto299540auto299540Theobroma cacaoexon
exon-auto299541auto299541Theobroma cacaoexon
exon-auto299542auto299542Theobroma cacaoexon
exon-auto299543auto299543Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto299544auto299544Theobroma cacaoCDS
CDS-auto299545auto299545Theobroma cacaoCDS
CDS-auto299546auto299546Theobroma cacaoCDS
CDS-auto299547auto299547Theobroma cacaoCDS
CDS-auto299548auto299548Theobroma cacaoCDS
CDS-auto299549auto299549Theobroma cacaoCDS
CDS-auto299550auto299550Theobroma cacaoCDS
CDS-auto299551auto299551Theobroma cacaoCDS
CDS-auto299552auto299552Theobroma cacaoCDS
CDS-auto299553auto299553Theobroma cacaoCDS
CDS-auto299554auto299554Theobroma cacaoCDS
CDS-auto299555auto299555Theobroma cacaoCDS
CDS-auto299556auto299556Theobroma cacaoCDS
CDS-auto299557auto299557Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022600.1 ID=Tc05v2_t022600.1|Name=Tc05v2_t022600.1|organism=Theobroma cacao|type=mRNA|length=1398bp
ATGGATCATATTGTCGGTGGGAAATTCAAAATGGGTCGAAAGATCGGAGC
TGGATCTTTCGGCGAGCTCTTCCTTGGGGTCAATATACAGACTGGGGAAG
AAGTTGCTGTAAAGATGGAACCTGTGAAGACCAAGCACCCTCAGCTTCAC
TATGAGTCAAAATTGTACATGCTTCTTCAGGGTGGAACGGGGGTTCCCCA
CCTCAAGTGGTTTGGAGTTGAAGGTGACTACAATATTATGGTTATTGAGC
TTCTAGGGCCAAGCCTTGAGGACTTGTTCAACTACTGCAATCGAAAGCTC
TCTTTGAAGACAGTGTTAATGCTCGCTGATCAGTTAATCAACAGAGTTGA
ATTTATGCACTCAAGGGGATTTCTTCATCGTGATATAAAGCCTGACAACT
TTCTAATGGGTTTGGGACGAAAAGCCAATCAGGTGTATATTATTGATTAT
GGCCTTGCTAAAAAGTTTAGGGATCTTCAAACTCACAAACACATACCCTA
TAGAGAAAACAAGAATCTTACGGGCACAGCTCGATATGCAAGCGTTAACA
CTCACCTTGGAGTTGAACAAAGCCGAAGAGATGATTTGGAATCACTGGGT
TATGTGCTCATGTATTTTTTACGAGGAAGCCTTCCCTGGCAGGGCCTGAA
GGCAGGGACGAAAAAACAGAAGTATGATAAAATCAGTGAAAAGAAGATGC
TAACTCCTGTTGAGGTACTCTGCAAGTCACATCCATCGGAGTTCATATCA
TACTTTCATTATTGTCGATCATTACGCTTCGAAGACAAGCCAGATTACTC
ATACTTGAAGAGGCTTTTCCGAGACTTATTTATTCGAGAAGGATATCAGT
TTGACTATGTATTTGACTGGACCATACTCAAGTATCCCCAGCTCACTGGT
AGCTCTAGACAACGGCCGTCAGGTGGAAAAGCTGCTTTAAATGCTGGACC
ATCTGCTGAAAGAACAGAGAAGCCATCAGTGGGACGAGAAATTCGCGATA
GATTTTCAGGTGCTGTTGAGGTATTTACTAGGAAAAATGCTTCAGGTAGT
GGACATCTCAGTGATCATTCAAAGCAGAAGGTATCAGAGAGGGCATCACC
ATCAAAGGATGTGGACAATGATTCTGGAAGGGGGCAAACTTCTTCCACCC
GCCCTAGCAGCTTGTCCAAGAGGGCGGTTGCCTCGAGCAGCAGGCCAGCC
TCTTCTGTGGGGCCCAGTGATAGTCGATCAAGTTGGCTTCTTTCAGGTAG
TAGTCGCCTCTCCACCAGCCAGAGACTCCATTCTGGGTCTGAGCACAAAT
CGTCTCTCTCCCGAGCTACAACCTCAAAAGGTATCCGTGAAGATCAGAAC
AAAAGCTCTGATCACCATTCGAGAGTCACAGATAAGAGGAAGGGGTGA
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protein sequence of Tc05v2_p022600.1

>Tc05v2_p022600.1 ID=Tc05v2_p022600.1|Name=Tc05v2_p022600.1|organism=Theobroma cacao|type=polypeptide|length=466bp
MDHIVGGKFKMGRKIGAGSFGELFLGVNIQTGEEVAVKMEPVKTKHPQLH
YESKLYMLLQGGTGVPHLKWFGVEGDYNIMVIELLGPSLEDLFNYCNRKL
SLKTVLMLADQLINRVEFMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDY
GLAKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLG
YVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSHPSEFIS
YFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQLTG
SSRQRPSGGKAALNAGPSAERTEKPSVGREIRDRFSGAVEVFTRKNASGS
GHLSDHSKQKVSERASPSKDVDNDSGRGQTSSTRPSSLSKRAVASSSRPA
SSVGPSDSRSSWLLSGSSRLSTSQRLHSGSEHKSSLSRATTSKGIREDQN
KSSDHHSRVTDKRKG*
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