Tc05v2_t022590.2

Overview
NameTc05v2_t022590.2
Unique NameTc05v2_t022590.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1701
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productserine/threonine protein phosphatase 2A regulatory subunit B''beta, transcript variant X1
NoteProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600066
GenbankXM_018122006.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022590Tc05v2_g022590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022590.2Tc05v2_p022590.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto299504auto299504Theobroma cacaoexon
exon-auto299505auto299505Theobroma cacaoexon
exon-auto299506auto299506Theobroma cacaoexon
exon-auto299507auto299507Theobroma cacaoexon
exon-auto299508auto299508Theobroma cacaoexon
exon-auto299509auto299509Theobroma cacaoexon
exon-auto299510auto299510Theobroma cacaoexon
exon-auto299511auto299511Theobroma cacaoexon
exon-auto299512auto299512Theobroma cacaoexon
exon-auto299513auto299513Theobroma cacaoexon
exon-auto299514auto299514Theobroma cacaoexon
exon-auto299515auto299515Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto299516auto299516Theobroma cacaoCDS
CDS-auto299517auto299517Theobroma cacaoCDS
CDS-auto299518auto299518Theobroma cacaoCDS
CDS-auto299519auto299519Theobroma cacaoCDS
CDS-auto299520auto299520Theobroma cacaoCDS
CDS-auto299521auto299521Theobroma cacaoCDS
CDS-auto299522auto299522Theobroma cacaoCDS
CDS-auto299523auto299523Theobroma cacaoCDS
CDS-auto299524auto299524Theobroma cacaoCDS
CDS-auto299525auto299525Theobroma cacaoCDS
CDS-auto299526auto299526Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022590.2 ID=Tc05v2_t022590.2|Name=Tc05v2_t022590.2|organism=Theobroma cacao|type=mRNA|length=1701bp
ATGGAGGCAGTTGTTGTCGGAGATGTGGCGTGTTTGGACGCGGAGCTATT
GCAGCTCCAGGAGATGTCTCCATTAGCTCTCAAATCCAATCCTGAATTCA
CTCAAAAGCTTTTCGAACAGTGGCTTTCGCTTCCTGATACTAACAAGCTG
GTGACATCATTGGTTAATGATGCAAAGGCTGGTAATCCCTTAAACGTTCA
TGGAAATACCTCCAGTGGAAGTACTGCCACGAGCAATTCTTTACCTTCCA
TGTTTCCTGCTGGCAGTGCACCTCCCCTTTCACCAAGAAGTACATCTGGT
TCCCCTCGTATAACAAAACAAAGGGTTGGTCCTTCAAACTTGGGTTCTCC
ACTGAAAGTAGTTAGTGAGCCCATGAAAGAGTTGATACCTCAGTTTTACT
TTAAAAATGGTCGTCCACCTCCAAATGAGCTTAAAGAACAATGCATGTTT
CGAATCAGTCAGTTTTTCTATGGCCACCCAGATGGGCTGCAGCTGCATGG
TAAGATACATGTAAGCATTGCTTTAATAGATGTTTCTGGAACTCTTCTGA
TATTTGTGTTTTACTGTCTATATGTATCAGAGTTCAAACTAGTGACTAAG
GAAATTTGCAAGCTGCCATCATTTTTCTCCCCATCACTTTTCAGAAAAAT
TGATGTTAATAGCACTGGTTTGATTACAAGAGATGCATTTATTGATTATT
GGGTCAATGGCAACATGTTGACGATGGATATAGCTACCCAAATATATACA
ATATTAAAGCAACCAGATCTCACATACCTCACTCAGGACGACTTCAAACC
TGTTCTTCGAGAACTATTGGCAACACATCCAGGGTTGGAGTTCTTACAGA
GTACACCTGAGTTTCAGGAAAGATATGCTGAAACGGTAATATATAGAATA
TATTACTACATAAATAGATCTGGGAATGGTCACCTCACTCTTAGGGAGTT
GAAACGTGGAAACTTGATTGATGCCATGCTACATGCTGATGAGGAAGAGG
ACATTAACAAAGTTTTGAGGTACTTTTCATATGAACATTTTTACGTGATA
TACTGCAAGTTTTGGGAGCTGGATACAGATCATGATTTCTTGATTGACAA
GGAGAACCTTATCCGATATGGTAACCATGCGCTTACCTACCAGATTGTCA
ATAGAATATTTTCTCAGGTTCCAAGAAAGTTTACCAGTAAGGTTGAAGGA
AAGATGGGGTATGAAGATTTTGTCTATTTTATCCTAGCAGAGGAGGACAA
GCCATCTGAGCCTAGTCTTGAGTATTGGTTCAAGTGTATAGATTTGGATG
GTAATGGAGTTATCACACGTAATGAAATGCAATTCTTTTATGAGGAGCAG
TTGCATCGAATGGAATGCATGGCCCAGGAGCCTGTGCTCTTTGAGGACAT
CTTATGTCAGATAATTGACATGATTAAACCAGAGGATGAGAGCTATATCA
CATTGTGTGACCTGAAAGGTTCTAAACTTTCTGGAAGTGTTTTCAATATC
CTTTTCAATCTTAACAAATTCATGGCCTTTGAAACTCGTGATCCATTCCT
CATTCGTCAGGAGCGTGAGAATCCTACATTGACAGAGTGGGATCGTTTTG
CACATAGAGAATATATTAGGCTTTCAATGGAAGAAGATGTCGAAGATGCC
TCTAATGGAAGTGCAGAAGTTTGGGATGAATCACTTGAGGCTCCCTTCTA
A
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protein sequence of Tc05v2_p022590.2

>Tc05v2_p022590.2 ID=Tc05v2_p022590.2|Name=Tc05v2_p022590.2|organism=Theobroma cacao|type=polypeptide|length=567bp
MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSLPDTNKL
VTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSG
SPRITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMF
RISQFFYGHPDGLQLHGKIHVSIALIDVSGTLLIFVFYCLYVSEFKLVTK
EICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIATQIYT
ILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRI
YYYINRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVI
YCKFWELDTDHDFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEG
KMGYEDFVYFILAEEDKPSEPSLEYWFKCIDLDGNGVITRNEMQFFYEEQ
LHRMECMAQEPVLFEDILCQIIDMIKPEDESYITLCDLKGSKLSGSVFNI
LFNLNKFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDA
SNGSAEVWDESLEAPF*
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