Tc05v2_t022170.1

Overview
NameTc05v2_t022170.1
Unique NameTc05v2_t022170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length477
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem I reaction center subunit IV B, chloroplastic
NotePhotosystem I reaction center subunit IV A, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600016
GenbankXM_018120491.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g022170Tc05v2_g022170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p022170.1Tc05v2_p022170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto297594auto297594Theobroma cacaoexon
exon-auto297595auto297595Theobroma cacaoexon
exon-auto297596auto297596Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto297597auto297597Theobroma cacaoCDS
CDS-auto297598auto297598Theobroma cacaoCDS
CDS-auto297599auto297599Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t022170.1 ID=Tc05v2_t022170.1|Name=Tc05v2_t022170.1|organism=Theobroma cacao|type=mRNA|length=477bp
ATGGCTACATGTAACATTGCATGTGCAGCATCTGGGTTTGTGCTAAAATC
CAGTTTGGCACCAAAACCAAGCTCAACTCCAAGGAATACTGTTGCCTTTT
CTTCCAAGCATGGAAATAATATTTCAAGAAGGCTAGTGGTACGAGCAGCA
GAGGAGGGACCGCCACCTCCACCACCACCACCACCAACACCAACACCGCC
AGAGGCTTCTACTACCACCACCACCACTGCCCCCGCAGAAGGTGAAGCAA
AGCCAGCTCCAAAGGCTGCCAAGCCACCTCCAATTGGACCCAAGAGGGGT
GCTAAGGTGAAAATCCTAAGAAGAGAGTCTTACTGGTACAACACTGTTGG
TTCAGTCGTGACAGTTGATCAGGACCCAAAGACAAGGTATCCAGTTGTGG
TTAGATTTAACAAAGTGAACTATGCCAATGTGTCAACCAACAACTATGCA
TTGGATGAGATTCAAGAGGTTGATTGA
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protein sequence of Tc05v2_p022170.1

>Tc05v2_p022170.1 ID=Tc05v2_p022170.1|Name=Tc05v2_p022170.1|organism=Theobroma cacao|type=polypeptide|length=159bp
MATCNIACAASGFVLKSSLAPKPSSTPRNTVAFSSKHGNNISRRLVVRAA
EEGPPPPPPPPPTPTPPEASTTTTTTAPAEGEAKPAPKAAKPPPIGPKRG
AKVKILRRESYWYNTVGSVVTVDQDPKTRYPVVVRFNKVNYANVSTNNYA
LDEIQEVD*
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