Tc05v2_t021080.1

Overview
NameTc05v2_t021080.1
Unique NameTc05v2_t021080.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length459
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 63 ESTs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsuperoxide dismutase [Cu-Zn], transcript variant X1
NoteSuperoxide dismutase [Cu-Zn]
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599890
GenbankXM_018122147.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g021080Tc05v2_g021080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p021080.1Tc05v2_p021080.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto295526auto295526Theobroma cacaoexon
exon-auto295527auto295527Theobroma cacaoexon
exon-auto295528auto295528Theobroma cacaoexon
exon-auto295529auto295529Theobroma cacaoexon
exon-auto295530auto295530Theobroma cacaoexon
exon-auto295531auto295531Theobroma cacaoexon
exon-auto295532auto295532Theobroma cacaoexon
exon-auto295533auto295533Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto295534auto295534Theobroma cacaoCDS
CDS-auto295535auto295535Theobroma cacaoCDS
CDS-auto295536auto295536Theobroma cacaoCDS
CDS-auto295537auto295537Theobroma cacaoCDS
CDS-auto295538auto295538Theobroma cacaoCDS
CDS-auto295539auto295539Theobroma cacaoCDS
CDS-auto295540auto295540Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t021080.1 ID=Tc05v2_t021080.1|Name=Tc05v2_t021080.1|organism=Theobroma cacao|type=mRNA|length=459bp
ATGGTGAAGGCTGTTGCCGTGCTTAGTAGCAGTGAAGGTGTCAGTGGAAC
TATTTTCTTCACTCAAGAGGGAGATGGTCCAACTACTGTGACTGGGAACA
TTTCTGGTCTTGAGCCTGGGCTCCACGGCTTCCATGTCCATGCCCTTGGG
GACACAACAAATGGTTGCATGTCAACAGGACCCCATTTTAATCCTGCTGG
CAAAGAGCATGGTGCCCCAGAAGATGAGAATCGCCATGCTGGTGATCTAG
GAAATGTTACTGTTGGTGATGATGGCTGTGTGAGTTTCTCTATTATTGAC
AAACAGATTCCTCTCACTGGGCCACTCTCAATTATTGGAAGAGCTGTTGT
TGTCCATGCAGATCCTGATGACCTTGGCAAGGGGGGCCATGAGCTTAGCA
AAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGTATAATTGGTCTG
CAAGGCTGA
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protein sequence of Tc05v2_p021080.1

>Tc05v2_p021080.1 ID=Tc05v2_p021080.1|Name=Tc05v2_p021080.1|organism=Theobroma cacao|type=polypeptide|length=153bp
MVKAVAVLSSSEGVSGTIFFTQEGDGPTTVTGNISGLEPGLHGFHVHALG
DTTNGCMSTGPHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCVSFSIID
KQIPLTGPLSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL
QG*
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