Tc05v2_t021010.1

Overview
NameTc05v2_t021010.1
Unique NameTc05v2_t021010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3141
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ProductFRIGIDA-like protein 5
NoteUncharacterized protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599883
GenbankXM_018120676.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g021010Tc05v2_g021010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p021010.1Tc05v2_p021010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto295472auto295472Theobroma cacaoexon
exon-auto295473auto295473Theobroma cacaoexon
exon-auto295474auto295474Theobroma cacaoexon
exon-auto295475auto295475Theobroma cacaoexon
exon-auto295476auto295476Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto295477auto295477Theobroma cacaoCDS
CDS-auto295478auto295478Theobroma cacaoCDS
CDS-auto295479auto295479Theobroma cacaoCDS
CDS-auto295480auto295480Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t021010.1 ID=Tc05v2_t021010.1|Name=Tc05v2_t021010.1|organism=Theobroma cacao|type=mRNA|length=3141bp
ATGGAGGATATTAAGCGAGAGATAAAACTTGGTGAGTTAAAGAGGGAGAG
CCTTCGTAAATCACTTGAGCAAGCCAGGGATCAAGCGTCTTCGATTCTGT
TGTTTACTTTACAATGGAAAGACTTAGAGAAACATTTTGATTTGATTCAA
CAGAATATTGAGAAAAGAGTGGAGGTTGTTGAATTGCAAGAAAAAGAGCT
AGAAACCGAGAAGAGAGCACTGAAGGAAAGACAAGAAGTGATTTGTTTGA
AAGAAAATGAATTAAGTTTGTTGAATGAAAAGATTGAAGAATGTAACAGG
GAGCGTAAGTTGAAACATACGGAAGCTAATTCGACGCAAAAATTGCTTGA
AGAGTGCTCACTACAGTTTACATTAAAAGAAGAGGACTTGGATTCAGTTA
GGAAATTGGTTGAGGGTTGTTCTAAGGAACTTAGTTTGAAGAAAGAGGAA
TTGTGTGCTGTGAACAAGTTGATGAGTGAATGTCTTGAAAAGCTAGAAGG
GAAGGAGAAGCAATTGGGGTTGGTAGAGGAACAGATTGAAAAATCTAGTA
AGGAACTTGGTGTGACAGAGGGGAAGTTGGATTTGGTGCAGTCGTTGGTT
GAAGAATGTGAAGGGAAGCTTGAGTCAAAAGAGAGGGAATTGGGGTTAGT
GACAAGAAGAGTTGATGAATGTTGTAATGAGATTTGTCTAAAAAATAATC
AATTGGACCATTTGCGGAGATCCATTGAGGAAAAATCTAAGGAGCTTGAG
TTTATAGAGATGGACTTGGATTTGAAGGAACATATGATGAATGAGTATGA
TGAAGTGCTTGAGTTAAAAGAGAAGGAGTTGGAATGTTTGCGAAATTCAG
TCAAGGAATGTTCTAACCAGCTTGAAATGAAGGAGAACGAACTTGTTAGA
AGCCAAGAAGTGATTGATGAACACTGTAAACAGCTTAATGAGCAGGAGAA
AATTCTAAATTCGATCAAATCCTTGATTCAGGAGTACAATGAAGAACTCG
AAGCCAAAGAGGAAAAATATGAGGCACTTGACAAATCTGTCAGAGATCAA
GCTGCTAAAGTCAAATCTAAAGAGAACGAATTAGGGTTGATTGAAGAAAC
AATTGTGGATCGCTCAGCAGAGCTTCATTCAAGAGATATTGAATTTCATT
CACTGCAAACTACGATAAGACGGAATCAAAAGGAACTTGAATCAACAAAG
AAGGAGCTCAATTCAGTCAAAGCAAGGGTGAGAGGATATTCTGAGGATCT
TGAATTGAAAGAGCAGGAGTTCAATGCTATACAAATGTGCATTGAAGAAC
ATAGGCAAGAACTTTGTTTGAAAGAGAAGCAACTCAGCTCAGTCCAAATA
TCAATTAAAGGATGCAGCAAGCAGCTCAAAGTAGAGGAGGAAAGGCTTAT
CACAATCAAGAACTCAATTTTGGAGTGCACCAAGGAACTTGAATCAAAAC
AACAGCAGCTTGAAGCGCTAAAAAATTCTCAGGGACAGCTCTCTGACATG
GTTGGATCAAAAGAAAAGCAACTGAATTCAATTGAAAAGCCATGCAGTAA
TCGCCTACAGGAAGCCAATGTGAAGGAGAAGTATCTGGATTCACTTAAAA
GATCATTAGAGGAACGCTTGGAAAAATTGGATTTAGAAAGGAAGCAGTTT
GAAGCTCGTGTCAAGGAGTTTGAAGTACAAGCAAAACAATTTGATTCTGT
CCAAAAGGCAGTTGAAGAACGAAGTAAAAAACTAGAATTGAAAGAGAAGC
AACTAACTAATGCCCTTCATTCTCAAGTGAGGAGTGAGAATCCTAGTTCT
TTTTCCTTACAGGTACTTGGAATCACAAACACAGAAACAGTGAACCCCAC
CATCCTTAACCAAATAAAGACTGAGCAGCTGGATAATTTTATGATTAGCA
ATGCGCATGAAACTTCATCTGCTGATCTTGGGGTTGATGCTACAATGGAT
GGAAGGAGTTTGCAAGGTATCAACAATGAGCATTTATACGAGCCTGATTT
GAGGCAGAATGAAGTTTTGGTTGCCCTTCAAATGTCACCAGATCCAGCCA
AGTTTGTTCTGGATCTGATGCTAGGGACATGTTCTGAACATCAGAAGAAG
GGTGGGACAGGATTCGAAGAAAGTGTTCTGAAGATTTATGTCCTTTTGTT
GGAACAACTTTTGCAAGTTTCACCACTTGTACAACCTAATGTGAAAGCAG
ATGCAATGAAGTTAGCAATCGAGTGGAAAGCGAAGCTGAGTTCGAGTGCT
CAAAATTACATTGAGGTCTTGGGTTTTTTGCAGTTTGTTGCTGCTTTTGG
ATTGGTGTCCTCTTTTAATAAAGATGAAATCTTCAAACTTCTTTTGACTG
CTGCTCAACACCAACAGGCTCAAAATGTATGCCGGGTCCTTGGTTTTACA
GATATGATTCCTGATTTCATTTGTAGTCTAATTGCAAGGAAGCAGTATAT
TGAAGCTGTTAGATTTGTCTGTGCGTTTGATTGCAAGGACAAGTTCCCAC
CAGAACTGCTCTTTAACCTGTTCTGGGAGGATGTAAATGGTGTGGCTCAT
GAGAAGTGCAAGATGGGGAAGAATTCCTCTGAAGTACGGGAGAAGGCCAG
TGATGAACAGATTGCTGCACTGAAATCAGCAATTGAATGCATCAAGAATT
GTAAGCTTGACTCCAGTATGCCGGTTGAGGTCATGGAGAAGTGCATTGCT
CGGCTAGAACAGCAAAAGATGAACAGGAGATTTTCTGCACTAGCCCCAGC
CCCTGCAATTCAACCAAAGCTTCAGGGCCAGACAAATCGTAATATTGGCC
CTTCTATCCCCAGGAATCAATCCAATCCTGTCGCCACAGTTCCAGGGCAG
TTTCAGGGTGGGATCTGTGCTTCCACTCCGGGGAGTAAACTGCAAGAGCT
GAGAAACAAGCGTGCTTGGACTAATGGACCAGCTATTAGATCCTATACTC
CTCAAGTGCCAACTGTTAACAAACCATATATTCCTTCAGCTTCACATCAT
GAATTAAGTGTTCCACTTAATCGAGACGTAGCTCATTTTGGTTTGGCTGC
TAACTTAGGTCATTCATCTAATTTGATGACCCGGCGGGTAAATATTGCTG
AAGAACAAGGCTTGACTCACAAAAGGCCCAAGCAGTGGTAG
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protein sequence of Tc05v2_p021010.1

>Tc05v2_p021010.1 ID=Tc05v2_p021010.1|Name=Tc05v2_p021010.1|organism=Theobroma cacao|type=polypeptide|length=1047bp
MEDIKREIKLGELKRESLRKSLEQARDQASSILLFTLQWKDLEKHFDLIQ
QNIEKRVEVVELQEKELETEKRALKERQEVICLKENELSLLNEKIEECNR
ERKLKHTEANSTQKLLEECSLQFTLKEEDLDSVRKLVEGCSKELSLKKEE
LCAVNKLMSECLEKLEGKEKQLGLVEEQIEKSSKELGVTEGKLDLVQSLV
EECEGKLESKERELGLVTRRVDECCNEICLKNNQLDHLRRSIEEKSKELE
FIEMDLDLKEHMMNEYDEVLELKEKELECLRNSVKECSNQLEMKENELVR
SQEVIDEHCKQLNEQEKILNSIKSLIQEYNEELEAKEEKYEALDKSVRDQ
AAKVKSKENELGLIEETIVDRSAELHSRDIEFHSLQTTIRRNQKELESTK
KELNSVKARVRGYSEDLELKEQEFNAIQMCIEEHRQELCLKEKQLSSVQI
SIKGCSKQLKVEEERLITIKNSILECTKELESKQQQLEALKNSQGQLSDM
VGSKEKQLNSIEKPCSNRLQEANVKEKYLDSLKRSLEERLEKLDLERKQF
EARVKEFEVQAKQFDSVQKAVEERSKKLELKEKQLTNALHSQVRSENPSS
FSLQVLGITNTETVNPTILNQIKTEQLDNFMISNAHETSSADLGVDATMD
GRSLQGINNEHLYEPDLRQNEVLVALQMSPDPAKFVLDLMLGTCSEHQKK
GGTGFEESVLKIYVLLLEQLLQVSPLVQPNVKADAMKLAIEWKAKLSSSA
QNYIEVLGFLQFVAAFGLVSSFNKDEIFKLLLTAAQHQQAQNVCRVLGFT
DMIPDFICSLIARKQYIEAVRFVCAFDCKDKFPPELLFNLFWEDVNGVAH
EKCKMGKNSSEVREKASDEQIAALKSAIECIKNCKLDSSMPVEVMEKCIA
RLEQQKMNRRFSALAPAPAIQPKLQGQTNRNIGPSIPRNQSNPVATVPGQ
FQGGICASTPGSKLQELRNKRAWTNGPAIRSYTPQVPTVNKPYIPSASHH
ELSVPLNRDVAHFGLAANLGHSSNLMTRRVNIAEEQGLTHKRPKQW*
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