Tc05v2_t020660.1

Overview
NameTc05v2_t020660.1
Unique NameTc05v2_t020660.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1896
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 67 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productbeta-glucosidase BoGH3B-like
NotePutative Beta-xylosidase/alpha-L-arabinofuranosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID108662268
GenbankXM_018121558.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020660Tc05v2_g020660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020660.1Tc05v2_p020660.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto294696auto294696Theobroma cacaoexon
exon-auto294697auto294697Theobroma cacaoexon
exon-auto294698auto294698Theobroma cacaoexon
exon-auto294699auto294699Theobroma cacaoexon
exon-auto294700auto294700Theobroma cacaoexon
exon-auto294701auto294701Theobroma cacaoexon
exon-auto294702auto294702Theobroma cacaoexon
exon-auto294703auto294703Theobroma cacaoexon
exon-auto294704auto294704Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto294705auto294705Theobroma cacaoCDS
CDS-auto294706auto294706Theobroma cacaoCDS
CDS-auto294707auto294707Theobroma cacaoCDS
CDS-auto294708auto294708Theobroma cacaoCDS
CDS-auto294709auto294709Theobroma cacaoCDS
CDS-auto294710auto294710Theobroma cacaoCDS
CDS-auto294711auto294711Theobroma cacaoCDS
CDS-auto294712auto294712Theobroma cacaoCDS
CDS-auto294713auto294713Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020660.1 ID=Tc05v2_t020660.1|Name=Tc05v2_t020660.1|organism=Theobroma cacao|type=mRNA|length=1896bp
ATGGCAAGGCCAAGAAGATCAATCCCCATCTTTTTTGTGGGAATTCTGCT
TTGCTTTTGCTTGGCAGCCTCGGAAAAGGCAGAACATGTGAAGTATAAGG
ATCCAAAGCAGCCATTGAACGTTCGAATCAAGGACCTGATTGGAAGGATG
ACATTAGAGGAAAAAATTGGACAGATGGTCCAGATTGAGCGGGCTGTTGC
TTCAGCCGAGGTGATGAAAAAGTATTTCATTGGTAGTGTATTGAGTGGAG
GAGGGAGTGTCCCAGCTCCAAAAGCTTCAGCAAAGACTTGGCTCAACATG
GTCAATGAATTTCAGAAGGGTTCGTTATCTACCCGATTAGGAATTCCAAT
GATTTATGGGATTGATGCTGTTCATGGACACAACAATGTCTACAAGGCAA
CCATTTTCCCTCACAACATTGGTCTAGGTGCTACCAGGGACCCTGCACTA
GTTAAGAAGATTGGAGCTGCAACAGCACTTGAAGTCAGAGCTACAGGCAT
TCCATATGCTTTTGCACCTTGTTTAGCGGTATGTAGGGATCCGAGATGGG
GTCGATGCTATGAAAGTTACAGTGAAGATCACAAGATTGTTCAAGCAATG
ACCGAGATTATACCAGGATTGCAAGGAGACATCCCTTCTAACTCTCGCAA
GGGTGTTCCATTTGTTGCTGGAAAGAAAAATGTTGCAGCTTGTGCTAAGC
ACTATGTAGGTGATGGTGGAACAACCAGGGGAATCAATGAGAACAATACA
GTGATAGACAGGCACGGTTTGCTTAGCATTCATATGCCAGCCTACTATAA
TTCAATTATCAAAGGTGTTTCAACCGTCATGACTTCCTATTCAAGCTGGA
ATGGAGTTAAGAATCATGCTAATCATGAGATGGTCACCAACTTTCTTAAG
AAAACACTTCGTTTCAGGGGCTTTGTCATCTCGGATTGGGAGGGTATTGA
CAGGATTACATCTCCACCTCATGCTAACTATACATATTCCATTCTAGCTT
CAATCAATGCCGGGCTTGACATGATTATGGTTCCAAACAACTATAAAGAA
TTCATTGATGGGCTGACCTACCTGGTGAAAAATAAATTCATCCCCATGAG
CCGCATTGATGATGCAGTGAAGAGGATTTTGCGGGTTAAGTTTGTGATGG
GTCTGTTTGAGGACCCGCTAGCAGATGACAGCTTGGTTGACCAACTTGGA
AGTCAGGAACATCGAGAGTTGGCTAGGGAAGCAGTGAGAAAATCACTTGT
GCTGCTAAAGAATGGAGACTCTGCCGATGCTCCATTACTTCCCTTACCCA
AGAAGGCACCGAAGATACTAGTAGCTGGTAGCCATGCAAACAATCTGGGT
TACCAATGTGGTGGATGGACAATTGAGTGGCAGGGACAAGGTGGCAATAA
CATCACAGATGGTACTACAATCCTCACTGCTATCAAGAAAACAGTTGATC
CAAAAACAAAAGTTGTATACAAGGAGAAACCTGATGCTGAATTTGTCAAG
TCCAACGATTTCTCATACGCCATTGTTGTAGTAGGGGAGCATCCATATGC
AGAGACAAATGGAGACAGCTTAAATTTGACAATTCCAGAACCTGGTCCAA
GCACAATCGGAAATGTTTGTGGAGCTGTGAAATGTGTTGTTGTCGTAATA
TCTGGTCGTCCTGTTGTGATCCAACCTTATGTTCGCTACATAGACGCTAT
TGTCGCTGCTTGGCTGCCGGGAAGTGAGGGTCAAGGTGTTGCTGATGTAC
TGTTTGGCGATTATGGTTTTACTGGCAAGCTTTCATTCACTTGGTTCAAG
ACTGTTGATCAGTTGCCAATGCATGTTGGAGATTCACATTATGATCCCCT
CTTCCCATTTGGGTTCGGCCTGACCACTAAACCAACCAAAGCTTAG
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protein sequence of Tc05v2_p020660.1

>Tc05v2_p020660.1 ID=Tc05v2_p020660.1|Name=Tc05v2_p020660.1|organism=Theobroma cacao|type=polypeptide|length=632bp
MARPRRSIPIFFVGILLCFCLAASEKAEHVKYKDPKQPLNVRIKDLIGRM
TLEEKIGQMVQIERAVASAEVMKKYFIGSVLSGGGSVPAPKASAKTWLNM
VNEFQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGLGATRDPAL
VKKIGAATALEVRATGIPYAFAPCLAVCRDPRWGRCYESYSEDHKIVQAM
TEIIPGLQGDIPSNSRKGVPFVAGKKNVAACAKHYVGDGGTTRGINENNT
VIDRHGLLSIHMPAYYNSIIKGVSTVMTSYSSWNGVKNHANHEMVTNFLK
KTLRFRGFVISDWEGIDRITSPPHANYTYSILASINAGLDMIMVPNNYKE
FIDGLTYLVKNKFIPMSRIDDAVKRILRVKFVMGLFEDPLADDSLVDQLG
SQEHRELAREAVRKSLVLLKNGDSADAPLLPLPKKAPKILVAGSHANNLG
YQCGGWTIEWQGQGGNNITDGTTILTAIKKTVDPKTKVVYKEKPDAEFVK
SNDFSYAIVVVGEHPYAETNGDSLNLTIPEPGPSTIGNVCGAVKCVVVVI
SGRPVVIQPYVRYIDAIVAAWLPGSEGQGVADVLFGDYGFTGKLSFTWFK
TVDQLPMHVGDSHYDPLFPFGFGLTTKPTKA*
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