Tc05v2_t020650.1

Overview
NameTc05v2_t020650.1
Unique NameTc05v2_t020650.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1911
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productbeta-glucosidase BoGH3B, transcript variant X2
NotePutative Beta-xylosidase/alpha-L-arabinofuranosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599843
GenbankXM_018122065.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020650Tc05v2_g020650Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020650.1Tc05v2_p020650.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto294652auto294652Theobroma cacaoexon
exon-auto294653auto294653Theobroma cacaoexon
exon-auto294654auto294654Theobroma cacaoexon
exon-auto294655auto294655Theobroma cacaoexon
exon-auto294656auto294656Theobroma cacaoexon
exon-auto294657auto294657Theobroma cacaoexon
exon-auto294658auto294658Theobroma cacaoexon
exon-auto294659auto294659Theobroma cacaoexon
exon-auto294660auto294660Theobroma cacaoexon
exon-auto294661auto294661Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto294662auto294662Theobroma cacaoCDS
CDS-auto294663auto294663Theobroma cacaoCDS
CDS-auto294664auto294664Theobroma cacaoCDS
CDS-auto294665auto294665Theobroma cacaoCDS
CDS-auto294666auto294666Theobroma cacaoCDS
CDS-auto294667auto294667Theobroma cacaoCDS
CDS-auto294668auto294668Theobroma cacaoCDS
CDS-auto294669auto294669Theobroma cacaoCDS
CDS-auto294670auto294670Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020650.1 ID=Tc05v2_t020650.1|Name=Tc05v2_t020650.1|organism=Theobroma cacao|type=mRNA|length=1911bp
ATGACAAGACCAAGATTGTTCATCTTCTTGATGGGACTTCTACTTTGTGG
TTGCTTTGAAATCTCAGCAAAAGCAGAATATATGAAGTATAAAGATCCAA
AACAGTCACTGCCTGTCCGAGTTCAGGACCTGTTGGACAGAATGACATTA
GAGGAAAAAATAGGACAAATGGTCCAAATTGACCGCAAAGTTGCTTCAGC
TGAGGTGATGAAGAAGTATTTCATCGGAAGTCTATTGAGTGGAGGAGGGA
GTGTCCCAGCTCCACAAGCTTCTGCAAAGGCTTGGATTGACATGGTCAAT
GAATTTCAGAAAGGTTGTTTATCTACCCGATTAGGAATTCCAATGATTTA
TGGGATTGATGCTGTTCATGGCCACAACAATGTTTACAATGCAACAATTT
TTCCTCACAACATTGGACTAGGAGCTACCAGGGACCCTGAACTAGTTAAG
AAAATTGGGGCTTCAACAGCACTTGAAGTCAGAGCTACTGGCATTCCATA
TGTTTTTGCACCTTGCATAGCGGTTTGCAGAGATCCAAGATGGGGTCGAT
GTTATGAAAGTTACAGCGAAGATCCCGAGGTTGTTGAAGCAATGACAGAG
ATTGTACCAGGATTACAAGGAGACATCCCTGCTAACTCTCCCAAGGGGGT
TCCATTTGTGGCTGGACAGAAAAATGTTGCAGCTTGTGCTAAGCACTATG
TAGGTGATGGTGGGACAACCCAGGGCATCAATGAGAACAACACTGTAATA
GACAGGCATGGTTTGGTTAGCATTCACATGCCAGGCTACTATGCTTCTAT
TATCAAAGGTGTTTCAACCATCATGGTCTCCTATTCGAGCTGGAATGGAA
TTAAGATGCATGCTAATCGCGATTTGATCACCGATTTTCTCAAGAACACA
CTTCGTTTCAGGGGTTTTGTCATCACGGATTGGGAAGGTCTTGACAGGAT
CACATCTCCACCTCATGCTAACTATTCATATTCAATTCAAGTTGGAATCA
AAGCTGGCATTGACATGGTCATGGTTCCATTCAACTATACAGAATTCATC
GACGGGCTAACCTTCCAGGTGAAAAACAATATAATCCCCATGAGCCGCAT
TAATGATGCAGTGATGAGAATTTTGCGAGTTAAGTTTGTAATGGGTCTAT
TCGAGAACCCACTAGCAGATTACAGCTTGGTCGACCAACTTGGAAGTCAG
GAGCATAGAGAGTTGGCTAGAGAAGCAGTGAGAAGATCACTTGTTTTGCT
AAAGAATGGACAATCTACCGATCATCCATTGCTTCCCCTACCCAAGAAGA
CTTCGAAAATACTAGTTGCCGGTAGTCATGCAGATAATTTGGGTTATCAA
TGCGGTGGATGGACAATTGAGTGGCAGGGCTTGAGCGGCAACAACCTCAC
AAGCGGAACAACAATCCTGACAGCTGTCAAGAACACAGTTGATTCAAGCA
CCAAAGTCGTATACAAGAAGAATCCCGACACTGAATTCGTCAAGTCCAAC
GATTTCTCATACGCCATTGTGGTAGTAGGGGAGCATCCATATGCAGAAAC
ACAAGGCGACAGCATGAATTTGACAATTGCAGACCCTGGCCCAAGCACAA
TCACAAATGTCTGCGGAGCTGTGAAATGTGTTGTTATCATCATATCCGGT
CGCCCTGTCGTCATCCAGCCATTTATTAACTCTATCGATGCTGTCGTCGC
CGCTTGGCTCCCAGGAACTGAGGGCCAAGGTGTTGCTGATGTTCTGTTTG
GTGACTATGGTTTTACAGGCAAGCTTCCTCGTACTTGGTTCAAGACTGTT
GATCAACTGCCGATGAATATCGGGGATCCACATTATGACCCTCTCTTCCC
GTTTGGGTTTGGCCTTACTACAGAACCTTCAAATGAGCAAATCACTTCTA
AGGACTTCTAA
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protein sequence of Tc05v2_p020650.1

>Tc05v2_p020650.1 ID=Tc05v2_p020650.1|Name=Tc05v2_p020650.1|organism=Theobroma cacao|type=polypeptide|length=637bp
MTRPRLFIFLMGLLLCGCFEISAKAEYMKYKDPKQSLPVRVQDLLDRMTL
EEKIGQMVQIDRKVASAEVMKKYFIGSLLSGGGSVPAPQASAKAWIDMVN
EFQKGCLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNIGLGATRDPELVK
KIGASTALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPEVVEAMTE
IVPGLQGDIPANSPKGVPFVAGQKNVAACAKHYVGDGGTTQGINENNTVI
DRHGLVSIHMPGYYASIIKGVSTIMVSYSSWNGIKMHANRDLITDFLKNT
LRFRGFVITDWEGLDRITSPPHANYSYSIQVGIKAGIDMVMVPFNYTEFI
DGLTFQVKNNIIPMSRINDAVMRILRVKFVMGLFENPLADYSLVDQLGSQ
EHRELAREAVRRSLVLLKNGQSTDHPLLPLPKKTSKILVAGSHADNLGYQ
CGGWTIEWQGLSGNNLTSGTTILTAVKNTVDSSTKVVYKKNPDTEFVKSN
DFSYAIVVVGEHPYAETQGDSMNLTIADPGPSTITNVCGAVKCVVIIISG
RPVVIQPFINSIDAVVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKTV
DQLPMNIGDPHYDPLFPFGFGLTTEPSNEQITSKDF*
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