Tc05v2_t020400.1

Overview
NameTc05v2_t020400.1
Unique NameTc05v2_t020400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2298
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 67 ESTs, 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, transcript variant X1
Note5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599818
GenbankXM_007029961.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020400Tc05v2_g020400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020400.1Tc05v2_p020400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto294253auto294253Theobroma cacaoexon
exon-auto294254auto294254Theobroma cacaoexon
exon-auto294255auto294255Theobroma cacaoexon
exon-auto294256auto294256Theobroma cacaoexon
exon-auto294257auto294257Theobroma cacaoexon
exon-auto294258auto294258Theobroma cacaoexon
exon-auto294259auto294259Theobroma cacaoexon
exon-auto294260auto294260Theobroma cacaoexon
exon-auto294261auto294261Theobroma cacaoexon
exon-auto294262auto294262Theobroma cacaoexon
exon-auto294263auto294263Theobroma cacaoexon
exon-auto294264auto294264Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto294265auto294265Theobroma cacaoCDS
CDS-auto294266auto294266Theobroma cacaoCDS
CDS-auto294267auto294267Theobroma cacaoCDS
CDS-auto294268auto294268Theobroma cacaoCDS
CDS-auto294269auto294269Theobroma cacaoCDS
CDS-auto294270auto294270Theobroma cacaoCDS
CDS-auto294271auto294271Theobroma cacaoCDS
CDS-auto294272auto294272Theobroma cacaoCDS
CDS-auto294273auto294273Theobroma cacaoCDS
CDS-auto294274auto294274Theobroma cacaoCDS
CDS-auto294275auto294275Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020400.1 ID=Tc05v2_t020400.1|Name=Tc05v2_t020400.1|organism=Theobroma cacao|type=mRNA|length=2298bp
ATGGCCTCCCACATTGTTGGATATCCCCGCATGGGACCCAAGAGAGAGCT
TAAGTTTGCTTTGGAATCTTTTTGGGACAAGAAGAGCAGCGCCGAGGATC
TGCAGAAGGTTGCAGCTGATCTCAGGTCATCCATATGGAAGCAGATGGCT
GATGCTGGGATTAAGTACATCCCCAGCAACACTTTCTCTTACTATGACCA
GGTGCTTGATACCACTTCAATGCTCGGAGCTGTTCCACCTAGATATAGCT
GGAATGGTGGGGAGATTGGATTTGACACTTACTTCTCCATGGCCAGAGGA
AACGCGTCTGTGCCGGCCATGGAAATGACCAAGTGGTTTGACACCAACTA
CCACTTCATTGTTCCTGAATTGGGACCTGATGTTAATTTCTCTTATGCAT
CTCACAAGGCAGTGGATGAGTACAAGGAAGCTAAGGCGCTTGGAGTAGAC
ACTGTCCCAGTCCTTATCGGCCCTGTCTCATACTTGCTGCTGTCTAAACC
TGCAAAGGGTGTTGAGAAGACCTTTTCTCTTCTCTCTCTCCTCCCCAAAA
TCATCCCTGTCTACAAGGAAGTTATATCTGAGCTTAAGGCAGCTGGTGCT
TCCTGGATTCAGTTTGATGAACCCACCCTTGTCTTGGATCTTGACTCTTA
CAAATTGGAAGCTTTCACTGCTGCTTATGCTGATTTGGAATCGACTCTCT
CCGGCTTGAATGTTTTGGTGGAGACCTACTTTGCTGATCTTACTGCTGAG
GCATTTAAGACCCTCTGTGGACTGAAGGGTGTCACCGCTTATGGTGTGGA
CTTGGTTCGTGGAACCCAGACCATTGGATTGATCAAGAGTGATTTCCCTA
AGGGCAAGTACCTCTTTGCTGGAGTTGTTGATGGAAGGAACATTTGGGCC
AATGATCTTGCTTCTTCTGTCAACACCTTGCAGGAGCTTGAGGCTGTTGT
GGGCAAAGACAAACTTGTGGTGTCCAGCTCCTGCTCACTTCTCCACACTG
CTGTTGATCTAGTAAATGAGACTAAGCTAGATGATGAAATCAAATCCTGG
CTTGCATTTGCTGCCCAGAAAGTTGTTGAAGTCAATGCACTTGCCAAGGC
ATTGGCTGGTCAGAAGGATGAGGCCTTCTTCTCTGCCAATGCTGCTGCTC
TGGCTTCAAGGAAGTCCTCCCCAAGGGTGACCAATGGGGCTGTTCAAAAG
GCTGCTGCTGCTTTGAAGAGCTCTGACCACCGTCGTGCAACTAATGTTAG
TGCTAGACTGGATGCCCAGCAGAAAAAGCTTAACCTTCCAGTCCTTCCCA
CCACAACCATTGGATCCTTCCCTCAAACCTTGGAACTCAGGAGAGTTCGC
CGTGAATTCAAGGCTAAAAAGATCTCTGAGGATGATTATGTTAAAGCCAT
TAAGGAGGAAATTAAGAAGGTTGTTGACCTTCAGGAAGAGCTTGACATTG
ATGTCCTGGTTCACGGAGAGCCTGAGAGAAACGATATGGTTGAGTACTTT
GGTGAGCAGTTGTCTGGTTTTGCTTTCACTGTTAATGGGTGGGTGCAATC
TTACGGATCTCGTTGTGTCAAGCCACCAATCATCTATGGTGATGTTAGCC
GCCCCAATCCCATGACTGTTTTCTGGTCATCTACCGCCCAAAGCATGACT
GCCCGCCCAATGAAGGGAATGCTTACTGGCCCTGTAACCATCCTCAACTG
GTCCTTTGTCAGAAATGATCAGCCTAGATTTGAGACATGCTACCAGATTG
CTTTGGCCATCAAGGACGAAGTGGAGGATCTTGAGAAGGCTGGTATCAAT
GTTATCCAAATTGATGAGGCTGCTTTGAGAGAGGGGTTACCTCTCAGGAA
GTCTGAACATGCCTTCTACTTGAAATGGGCTGTCCACTCCTTCAGGATCA
CCAACTGCGGTGTCCAGGACACTACCCAGATCCACACCCACATGTGCTAC
TCCAACTTCAATGATATCATCCACTCTATTATTGACATGGATGCTGATGT
CATCACCATTGAGAACTCACGTTCAGATGAGAAGCTCCTGTCAGTCTTCC
GTGAAGGAGTGAAGTATGGTGCTGGAATTGGCCCTGGTGTCTATGATATC
CACTCTCCCAGAATACCATCAACCGAAGAGATTGCTGACAGAATTAACAA
GATGCTTGCTGTGCTTGAGACCAACATCTTGTGGGTTAACCCTGACTGTG
GACTCAAGACCCGCAAGTATGCCGAGGTGAAACCAGCCCTCAAAAACATG
GTTGCTGCTGCCAAGTTGCTCCGCACCCAACTTGCCAGTGCTAAGTGA
back to top

protein sequence of Tc05v2_p020400.1

>Tc05v2_p020400.1 ID=Tc05v2_p020400.1|Name=Tc05v2_p020400.1|organism=Theobroma cacao|type=polypeptide|length=766bp
MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMA
DAGIKYIPSNTFSYYDQVLDTTSMLGAVPPRYSWNGGEIGFDTYFSMARG
NASVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVDEYKEAKALGVD
TVPVLIGPVSYLLLSKPAKGVEKTFSLLSLLPKIIPVYKEVISELKAAGA
SWIQFDEPTLVLDLDSYKLEAFTAAYADLESTLSGLNVLVETYFADLTAE
AFKTLCGLKGVTAYGVDLVRGTQTIGLIKSDFPKGKYLFAGVVDGRNIWA
NDLASSVNTLQELEAVVGKDKLVVSSSCSLLHTAVDLVNETKLDDEIKSW
LAFAAQKVVEVNALAKALAGQKDEAFFSANAAALASRKSSPRVTNGAVQK
AAAALKSSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVR
REFKAKKISEDDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYF
GEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSSTAQSMT
ARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIN
VIQIDEAALREGLPLRKSEHAFYLKWAVHSFRITNCGVQDTTQIHTHMCY
SNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI
HSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALKNM
VAAAKLLRTQLASAK*
back to top