Tc05v2_t020300.1

Overview
NameTc05v2_t020300.1
Unique NameTc05v2_t020300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length459
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 84 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productubiquitin-conjugating enzyme E2 2
NoteUbiquitin-conjugating enzyme E2 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599807
GenbankXM_007029944.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020300Tc05v2_g020300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020300.1Tc05v2_p020300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto293998auto293998Theobroma cacaoexon
exon-auto293999auto293999Theobroma cacaoexon
exon-auto294000auto294000Theobroma cacaoexon
exon-auto294001auto294001Theobroma cacaoexon
exon-auto294002auto294002Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto294003auto294003Theobroma cacaoCDS
CDS-auto294004auto294004Theobroma cacaoCDS
CDS-auto294005auto294005Theobroma cacaoCDS
CDS-auto294006auto294006Theobroma cacaoCDS
CDS-auto294007auto294007Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020300.1 ID=Tc05v2_t020300.1|Name=Tc05v2_t020300.1|organism=Theobroma cacao|type=mRNA|length=459bp
ATGTCTACCCCAGCAAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTCCA
GCAGGATCCACCTGCTGGTATTAGTGGGGCTCCTCAAGATAATAATATCA
TGCTTTGGAACGCTGTTATTTTTGGGCCTGATGATACTCCTTGGGATGGA
GGTACGTTCAAGTTGACTTTGCAGTTTACAGAGGATTATCCAAATAAACC
TCCAACGGTCCGGTTCATCTCGAGAATGTTTCATCCAAATATCTATGCAG
ACGGAAGTATTTGTCTGGATATTTTACAAAATCAGTGGAGTCCAATATAT
GATGTTGCAGCTATACTCACCTCTATCCAGTCTCTACTTTGTGATCCAAA
CCCAAACTCTCCAGCAAACTCTGAAGCTGCTCGTATGTTTAGTGAGAATA
AGCGGGAATACAACCGAAGAGTGCGTGAAATTGTGGAGCAGAGCTGGACC
GCTGACTGA
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protein sequence of Tc05v2_p020300.1

>Tc05v2_p020300.1 ID=Tc05v2_p020300.1|Name=Tc05v2_p020300.1|organism=Theobroma cacao|type=polypeptide|length=153bp
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG
GTFKLTLQFTEDYPNKPPTVRFISRMFHPNIYADGSICLDILQNQWSPIY
DVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT
AD*
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