Tc05v2_t020100.3

Overview
NameTc05v2_t020100.3
Unique NameTc05v2_t020100.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length885
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productprobable S-sulfocysteine synthase, chloroplastic, transcript variant X3
NoteProbable S-sulfocysteine synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599769
GenbankXM_018122448.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020100Tc05v2_g020100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020100.3Tc05v2_p020100.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto293617auto293617Theobroma cacaoexon
exon-auto293618auto293618Theobroma cacaoexon
exon-auto293619auto293619Theobroma cacaoexon
exon-auto293620auto293620Theobroma cacaoexon
exon-auto293621auto293621Theobroma cacaoexon
exon-auto293622auto293622Theobroma cacaoexon
exon-auto293623auto293623Theobroma cacaoexon
exon-auto293624auto293624Theobroma cacaoexon
exon-auto293625auto293625Theobroma cacaoexon
exon-auto293626auto293626Theobroma cacaoexon
exon-auto293627auto293627Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto293628auto293628Theobroma cacaoCDS
CDS-auto293629auto293629Theobroma cacaoCDS
CDS-auto293630auto293630Theobroma cacaoCDS
CDS-auto293631auto293631Theobroma cacaoCDS
CDS-auto293632auto293632Theobroma cacaoCDS
CDS-auto293633auto293633Theobroma cacaoCDS
CDS-auto293634auto293634Theobroma cacaoCDS
CDS-auto293635auto293635Theobroma cacaoCDS
CDS-auto293636auto293636Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020100.3 ID=Tc05v2_t020100.3|Name=Tc05v2_t020100.3|organism=Theobroma cacao|type=mRNA|length=885bp
ATGATATATCTTAACAAAGTAACAGAAGGATGTGTGGCAAACATTGCTGC
AAAACTTGAATCCATGGAACCTTGTCGGAGTGTCAAAGACAGGATTGGTC
TTAGTATGGTATCTGAGGCTGAAGATAGTGGAGCAATTTCTCCTGGGAAG
ACCATATTAGTGGAACCAACAAGTGGAAATACAGGACTTGGAATTGCCTT
TGTTGCAGCAACTAAGGGATACAAGCTTATAGTAACTATGCCTGCTTCTA
TAAACCTTGAAAGGAGAATCCTTTTACGTGCATTTGGAGCAGAGATCGTT
CTGACAGACCCAGAAAAGGGCTTAAAAGGAGCTGTTGATAAAGCTGCAGA
AATTGTGCTTAACACTCCAAATGCTTTCATGTTTCAACAGTTTGATAATA
TGGCTAATACAAAGGTTCACTTTGAAACTACAGGACCAGAAATATGGGAG
GATACTTTGGGTAATGTTGACATATTTGTTGCTGGAATTGGAACTGGTGG
TACCATTACAGGCACAGGACGTTACTTGAAAATGATGAACAAAGAAATTA
AGGTAGTTGGTGTGGAACCTGCTGAGAGGAGTATAATCTCTGGAGAAAAC
CCAGGTTATTTGCCAAGCATCTTGGATGTTAAATTGCTTGATGAAGTTAT
CAAGGTCACCAATGATGAAGCTGTTGATATGGCAAGGAGATTAGCACTGG
AGGAAGGTCTACTGGTTGGGATTTCGTCGGGAGCTGCTGCAGCTGCTGCA
ATTAGCTTAGCAAAAAGGCCTGAGAATGCTGGAAAACTTATTGTGGTTAT
ATTTCCAAGCTTTGGTGAGAGGTATATTTCAACTGTTCTTTTTCGTTCTA
TACATGAAGAGGTTCAACAAATGCAAGCAAGATAG
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protein sequence of Tc05v2_p020100.3

>Tc05v2_p020100.3 ID=Tc05v2_p020100.3|Name=Tc05v2_p020100.3|organism=Theobroma cacao|type=polypeptide|length=295bp
MIYLNKVTEGCVANIAAKLESMEPCRSVKDRIGLSMVSEAEDSGAISPGK
TILVEPTSGNTGLGIAFVAATKGYKLIVTMPASINLERRILLRAFGAEIV
LTDPEKGLKGAVDKAAEIVLNTPNAFMFQQFDNMANTKVHFETTGPEIWE
DTLGNVDIFVAGIGTGGTITGTGRYLKMMNKEIKVVGVEPAERSIISGEN
PGYLPSILDVKLLDEVIKVTNDEAVDMARRLALEEGLLVGISSGAAAAAA
ISLAKRPENAGKLIVVIFPSFGERYISTVLFRSIHEEVQQMQAR*
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