Tc05v2_t020100.2

Overview
NameTc05v2_t020100.2
Unique NameTc05v2_t020100.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1155
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productprobable S-sulfocysteine synthase, chloroplastic, transcript variant X1
NoteProbable S-sulfocysteine synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599769
GenbankXM_007029867.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020100Tc05v2_g020100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020100.2Tc05v2_p020100.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto293594auto293594Theobroma cacaoexon
exon-auto293595auto293595Theobroma cacaoexon
exon-auto293596auto293596Theobroma cacaoexon
exon-auto293597auto293597Theobroma cacaoexon
exon-auto293598auto293598Theobroma cacaoexon
exon-auto293599auto293599Theobroma cacaoexon
exon-auto293600auto293600Theobroma cacaoexon
exon-auto293601auto293601Theobroma cacaoexon
exon-auto293602auto293602Theobroma cacaoexon
exon-auto293603auto293603Theobroma cacaoexon
exon-auto293604auto293604Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto293605auto293605Theobroma cacaoCDS
CDS-auto293606auto293606Theobroma cacaoCDS
CDS-auto293607auto293607Theobroma cacaoCDS
CDS-auto293608auto293608Theobroma cacaoCDS
CDS-auto293609auto293609Theobroma cacaoCDS
CDS-auto293610auto293610Theobroma cacaoCDS
CDS-auto293611auto293611Theobroma cacaoCDS
CDS-auto293612auto293612Theobroma cacaoCDS
CDS-auto293613auto293613Theobroma cacaoCDS
CDS-auto293614auto293614Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020100.2 ID=Tc05v2_t020100.2|Name=Tc05v2_t020100.2|organism=Theobroma cacao|type=mRNA|length=1155bp
ATGGCACTGTCATCGTCTTTGCTTCATCTTCCTCCTTCAAAACCCTTTGT
TTTCCCAGCTCAACGGCACCGTTTTCCACCCTTCAGAGCTTCATTTAACT
TTTCATTTTCTAATAAAACTAAATTCAATATACAAAATCGCACCTTTGCT
GCAACAAGAAGAGCTTCTTCTTTAGTAGCTGAAGAAGAACAAGAAGAACA
AGAACAAGAAGAGGAATTTGAAGCTGTTAACATTGCTGAGGATGTAACCC
AGTTGATCGGGAATACTCCAATGATATATCTTAACAAAGTAACAGAAGGA
TGTGTGGCAAACATTGCTGCAAAACTTGAATCCATGGAACCTTGTCGGAG
TGTCAAAGACAGGATTGGTCTTAGTATGGTATCTGAGGCTGAAGATAGTG
GAGCAATTTCTCCTGGGAAGACCATATTAGTGGAACCAACAAGTGGAAAT
ACAGGACTTGGAATTGCCTTTGTTGCAGCAACTAAGGGATACAAGCTTAT
AGTAACTATGCCTGCTTCTATAAACCTTGAAAGGAGAATCCTTTTACGTG
CATTTGGAGCAGAGATCGTTCTGACAGACCCAGAAAAGGGCTTAAAAGGA
GCTGTTGATAAAGCTGCAGAAATTGTGCTTAACACTCCAAATGCTTTCAT
GTTTCAACAGTTTGATAATATGGCTAATACAAAGGTTCACTTTGAAACTA
CAGGACCAGAAATATGGGAGGATACTTTGGGTAATGTTGACATATTTGTT
GCTGGAATTGGAACTGGTGGTACCATTACAGGCACAGGACGTTACTTGAA
AATGATGAACAAAGAAATTAAGGTAGTTGGTGTGGAACCTGCTGAGAGGA
GTATAATCTCTGGAGAAAACCCAGGTTATTTGCCAAGCATCTTGGATGTT
AAATTGCTTGATGAAGTTATCAAGGTCACCAATGATGAAGCTGTTGATAT
GGCAAGGAGATTAGCACTGGAGGAAGGTCTACTGGTTGGGATTTCGTCGG
GAGCTGCTGCAGCTGCTGCAATTAGCTTAGCAAAAAGGCCTGAGAATGCT
GGAAAACTTATTGTGGTTATATTTCCAAGCTTTGGTGAGAGGTATATTTC
AACTGTTCTTTTTCGTTCTATACATGAAGAGGTTCAACAAATGCAAGCAA
GATAG
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protein sequence of Tc05v2_p020100.2

>Tc05v2_p020100.2 ID=Tc05v2_p020100.2|Name=Tc05v2_p020100.2|organism=Theobroma cacao|type=polypeptide|length=385bp
MALSSSLLHLPPSKPFVFPAQRHRFPPFRASFNFSFSNKTKFNIQNRTFA
ATRRASSLVAEEEQEEQEQEEEFEAVNIAEDVTQLIGNTPMIYLNKVTEG
CVANIAAKLESMEPCRSVKDRIGLSMVSEAEDSGAISPGKTILVEPTSGN
TGLGIAFVAATKGYKLIVTMPASINLERRILLRAFGAEIVLTDPEKGLKG
AVDKAAEIVLNTPNAFMFQQFDNMANTKVHFETTGPEIWEDTLGNVDIFV
AGIGTGGTITGTGRYLKMMNKEIKVVGVEPAERSIISGENPGYLPSILDV
KLLDEVIKVTNDEAVDMARRLALEEGLLVGISSGAAAAAAISLAKRPENA
GKLIVVIFPSFGERYISTVLFRSIHEEVQQMQAR*
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