Tc05v2_t019780.1

Overview
NameTc05v2_t019780.1
Unique NameTc05v2_t019780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length588
Properties
Property NameValue
ProductTATA-box-binding protein 2
Model evidenceSupporting evidence includes similarity to: 87 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
NoteTATA-box-binding protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599738
GenbankXM_007029823.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g019780Tc05v2_g019780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p019780.1Tc05v2_p019780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto292985auto292985Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto292986auto292986Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t019780.1 ID=Tc05v2_t019780.1|Name=Tc05v2_t019780.1|organism=Theobroma cacao|type=mRNA|length=588bp
ATGGCAGCTGATAGAGTGTTGCAGAGTAGCCATGTTTCATGTTCTGGCGT
TGTCCCGGCCATTGAGAACGTGGTGTCATCCGTCGACCTCGGTTGCTCGC
TGGACCTCAAAGCCATTGCCCTTCGTGCTCGAAATACTGAATACAACCCC
GAAAGGTTTGCTGCACTGATGATGAGGATAAGGGAATCCAGAACCACTGC
GCTTATATTCTCCTCTGGGAAGATGGTCTGCACTGGAGCCGAAACTGAGC
AACAATCCCGCTTGGCAGCCCGCAAGTATGCTCGGATCATTCAAAAGCTT
GGTTTTGATGTCAAGTTCAAGGATTTCCAGATTCAGAACATCGTTGCTTC
TTGTGATCTTCCATTTTCCGTCAACCTTACACATTTGGGGAATTCTCATT
ACGAGTCTTCAGTATACGAGCCAGAATTGTTTCCGGGATTGATTTATCGG
ATGAAACAATCCAAAGTTATGATTAAGATTTTTTCTTCTGGAAAGATCGT
TGTCGCGGGAACCCATGATAGAAAGGAGATTTTCAAAGCCTTCGATAACA
TATATCCAATTCTTATGTCTTTCAGAATAGACAAGTGA
back to top

protein sequence of Tc05v2_p019780.1

>Tc05v2_p019780.1 ID=Tc05v2_p019780.1|Name=Tc05v2_p019780.1|organism=Theobroma cacao|type=polypeptide|length=196bp
MAADRVLQSSHVSCSGVVPAIENVVSSVDLGCSLDLKAIALRARNTEYNP
ERFAALMMRIRESRTTALIFSSGKMVCTGAETEQQSRLAARKYARIIQKL
GFDVKFKDFQIQNIVASCDLPFSVNLTHLGNSHYESSVYEPELFPGLIYR
MKQSKVMIKIFSSGKIVVAGTHDRKEIFKAFDNIYPILMSFRIDK*
back to top