Tc05v2_t019360.1

Overview
NameTc05v2_t019360.1
Unique NameTc05v2_t019360.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2805
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productdisease resistance protein RPM1, transcript variant X5
NotePutative Disease resistance protein RPM1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599691
GenbankXM_018121461.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g019360Tc05v2_g019360Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p019360.1Tc05v2_p019360.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto292295auto292295Theobroma cacaoexon
exon-auto292296auto292296Theobroma cacaoexon
exon-auto292297auto292297Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto292298auto292298Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t019360.1 ID=Tc05v2_t019360.1|Name=Tc05v2_t019360.1|organism=Theobroma cacao|type=mRNA|length=2805bp
ATGGCTTTAAGCGCAACAGATCTCTTATTGGGTAGGATACTTTCCATCAT
GGAAAACGAAGCATCATTGCTGAGTGGGGTTCATGATGAAATCAATGAAC
TCAAGCTTGAGCTGACTAGCATGAGATCCTTTCTTGAGGATGCTGATAGA
ACTAGAGTAGTGCAGAGCAAGGCAGAGAATGATTGGGTGGTAGGTGTGCG
AGAAATTGCTCATCAAGTAGAAGATATCATTGACAAGTACATGTATGACA
TGAACAGGCAACAACAATGGAGGTGGGGGTATACATTCACAAGTTTTTTC
CTAAAGGGTATTCAGGTTCCGCAGAATCTATGGATGAAGGATAGATTTGC
TAAAAAGTTACAAGATATCAATAAGGAGATTAAAAGCATTCCAGAGAGAA
GCCAGCGATACGGGGTTTATCAATTAGAAGTGAAGGATAAAAATTTACAA
GGAATGCTTGGCAATTGTGATCTTAATTGGCTGAAAAATGAGAGTGAATC
TTCTCTTTTTCTTAAAGATGATGATCTTGTGGGCATCAAAAAGACTCAAC
GCGAGTTATTGGGTTGGTTGACGAATGGAGACCTTGAAAGAACTGTGATT
TCTGTGACAGGGATGGGTGGTTTAGGCAAAACTACTCTTGTTGCTAACAC
CTTCAATAAACAAGTTGTCAATCAGCATTTTGACTTTTGTGCCTGGATCA
CTGTCTCACAACAATATGCAATTGAAGAATTGCTTAGATCCATGATCAAA
GAAATTTACATGAAGGCAAATGAACAAACTCCTGTGAACCTGAACGCCCT
GAGTTACAGGGATTTGGGGGAGAAACTTGAGAAGTACTTGCAGGCAAAGA
GGTATCTTATTGTGTTAGATGATGTTTGGAGCCTCAACCTCTGGCAACAG
ATAAGCAGAGTCCTTCCTAATGGAAGGAATGGAAGTCGGATCATGCTTAC
TACACGAATGAAAGAGGTTGCTTTTTTCCAATTTGGGATTGTAAACCACG
TCCTTGAACTTAAGCCCTTAAGAGACAAGGAGGCTTGGACGCTTTTCTGC
ATGAAAGCTTTCCCAAGCAATCTTGGTCAATGTCCACCATATCTTGATTC
TTTAGCGAGGAACCTAGCTGAAAAATGTAAAGGCTTGCCGTTAGCTATTG
TGGCTTTGGGAGGTTTGTTGTCTTCCAAGAAGTTCCTAGCAGAATGGAGA
AATGTCCATGACAACTTAAATTGGGAGCTAAGCAACAACCCTGAGCTGGA
AGCAGTGAAGTGTATCTTACTGCTTAGTTACTATCATCTGCCTTACCGAC
TTAAGCATTGTTTTTTATACTGTTGCATATTCCCAGAAGATTATCTGATT
AGGCGAAACAGGCTCATTAGACTCTGGATGGCAGAAGGCTTTGTGGAGCC
AGTTACAGGAGCAACACCAGAAGTAGTAGCTGAGAGATACCTGACGGAAT
TGATTTCTCGAGGCTTGCTTCAAGTTACAAAGAGGAATGAATCTGGAAGG
CCGCAAACATGTAAGATGCACGACATTCTGCGAGAGCTTGCGGTTTCCAT
ATCAGAAACAGAAAAGTTTGTCGCCATATCTGATAGGAAAGAAGCAGTTG
TAGTAGGAGACAATGGAATTCACCGTTTGTCAATTGAGGTAAGGGATAAA
GAGATGAAAGCAGGAAAGGGTATATCAAAACTTCGTTCATTGTTTGTTTT
TGCTGTTGATGAAATCTCTAAGTCTTCCTGTAATAGCTTGCCATCTGGTT
TTAAATTGTTGAGAGTGTTGGATTTACAAGATGCCCCAATCAACCAACTC
CCAGGTGAAGTGGTAAATTTATTCAATTTGAGATATCTGAACTTAACAGG
GACTCAAGTGAAGGAGCTTCCAAAATCGATCGGAAAGCTTTGTAACTTAC
AGTCCTTGTTCCTCAAGGAAACCCAAATTGAAGAGCTTCCGCCAGGAATC
GTGAAGTTGAAAAACCTGCGGCATCTAATTGTTTACCGTTTCAATATTAG
AGGGACGGACTATGACCGTTGGGTCGGCATGCGTTTACCATCCAACATCT
TCTTGGTAAAGAGCTTACAAGTGTTGACTTTTGCGGAAGCAGGGGACACC
TTCATAAAAAATCTCAGCAAAATGACGCAGCTAAAAAGGCTTTGCTTTGC
GAATGTCAAGGAAGCTAATGAAAAAGACCTGTGCTTCTCCATTGGAAAAA
TAAGCCTCCTTCGCTACTTAATGGTGATGTCGTGTAATAAGGAGGAGCGA
TTGAAGATGGATCAACTTGTCGAAGCTCCTCCTTGCCTTGAGAAACTTGT
TCTGGCTGGGAAATTGGAGAAGCTGCCGCACTGGTTTAAGTCCCTCCAAA
ACCTCACATGTCTGAGACTACATTGGTCTAGATTGAGGGAAGAAGGTTTT
CTCACTCACATCCAAGCATTGCCTAACCTGGGACGAATTACACTCGTGAA
TGCGTTCGAGGGAGAGCGGTTATGCTTTCTTCAAGGGTTCCAAAAGCTTA
AGGTTTTAAGAATACAGAAATTCCCTGGGCTGAAAGACATTGTGATAAAT
AAAGGAGTCATGCCTGGTCTTCAGGAGCTAAACATACGAGAATGCCCAAA
GTTTGTGAAATTACCACATGCTTGGGGAAGTGATCTACCTGATCTCAGAA
AAGTTTGTTTGAGGGATGTTTCGAGTGAGATTATTGAGCAAATCTGTGGA
GCGCAGAGTATGGCTCAGCCAGCAATCAGAGTCATCTTATTAAGCAGAGT
GGAAGATAATGATGATGAATCTAATTTCAAGTGGGTGTATAGAACCTATG
ACTGA
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protein sequence of Tc05v2_p019360.1

>Tc05v2_p019360.1 ID=Tc05v2_p019360.1|Name=Tc05v2_p019360.1|organism=Theobroma cacao|type=polypeptide|length=935bp
MALSATDLLLGRILSIMENEASLLSGVHDEINELKLELTSMRSFLEDADR
TRVVQSKAENDWVVGVREIAHQVEDIIDKYMYDMNRQQQWRWGYTFTSFF
LKGIQVPQNLWMKDRFAKKLQDINKEIKSIPERSQRYGVYQLEVKDKNLQ
GMLGNCDLNWLKNESESSLFLKDDDLVGIKKTQRELLGWLTNGDLERTVI
SVTGMGGLGKTTLVANTFNKQVVNQHFDFCAWITVSQQYAIEELLRSMIK
EIYMKANEQTPVNLNALSYRDLGEKLEKYLQAKRYLIVLDDVWSLNLWQQ
ISRVLPNGRNGSRIMLTTRMKEVAFFQFGIVNHVLELKPLRDKEAWTLFC
MKAFPSNLGQCPPYLDSLARNLAEKCKGLPLAIVALGGLLSSKKFLAEWR
NVHDNLNWELSNNPELEAVKCILLLSYYHLPYRLKHCFLYCCIFPEDYLI
RRNRLIRLWMAEGFVEPVTGATPEVVAERYLTELISRGLLQVTKRNESGR
PQTCKMHDILRELAVSISETEKFVAISDRKEAVVVGDNGIHRLSIEVRDK
EMKAGKGISKLRSLFVFAVDEISKSSCNSLPSGFKLLRVLDLQDAPINQL
PGEVVNLFNLRYLNLTGTQVKELPKSIGKLCNLQSLFLKETQIEELPPGI
VKLKNLRHLIVYRFNIRGTDYDRWVGMRLPSNIFLVKSLQVLTFAEAGDT
FIKNLSKMTQLKRLCFANVKEANEKDLCFSIGKISLLRYLMVMSCNKEER
LKMDQLVEAPPCLEKLVLAGKLEKLPHWFKSLQNLTCLRLHWSRLREEGF
LTHIQALPNLGRITLVNAFEGERLCFLQGFQKLKVLRIQKFPGLKDIVIN
KGVMPGLQELNIRECPKFVKLPHAWGSDLPDLRKVCLRDVSSEIIEQICG
AQSMAQPAIRVILLSRVEDNDDESNFKWVYRTYD*
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