Tc05v2_t018560.1

Overview
NameTc05v2_t018560.1
Unique NameTc05v2_t018560.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length567
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productprotein-S-isoprenylcysteine O-methyltransferase A, transcript variant X1
NoteProtein-S-isoprenylcysteine O-methyltransferase B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599782
GenbankXM_018120568.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g018560Tc05v2_g018560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p018560.1Tc05v2_p018560.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto290925auto290925Theobroma cacaoexon
exon-auto290926auto290926Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto290927auto290927Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t018560.1 ID=Tc05v2_t018560.1|Name=Tc05v2_t018560.1|organism=Theobroma cacao|type=mRNA|length=567bp
ATGAACCCATTATCTCAATTTTTGTTGGCGATTCTCTTTTTTCATAGCTC
AGAATACATTTTAGCCGTTGCCATTCATGGGATATCAAATGTTAGTCTCA
CGTCACTTCTTGTTAGCAAAGAATATGCTTTAGCCATGGTTTTTTCATTG
GTTGAATACTATTTTGAAGTCCTTTTATTCCCTGGATTAAAAGAACATTT
GTGGGTTAGCAACCTGGGGCTGGCAATGGTTGTTATAGGAGAAATTATAA
GAAAGTTGGCCATTGTAACCGCGGGTCGGTCTTTTACACATTTGATTAAG
AGATACCATGAGGAGCATCATAAGTTGGTTACTGACGGCGTTTATGGATT
TGTTCGTCATCCGAGTTATTGTGGTTTCTTGGTTTGGTCAGTCGGTACCC
AGATAATGCTGTGTAATCCCATAGCAACTATTGGTTTTGCGGTTGTAGTT
TGGCAGTTTTTTGCAAAGCGGATTCCTTATGAGGAATATTTTTTAAGGCA
GTTTTTTGGGGCAGATTATGAGGAGTATGCTCGGCGAGTTCCTTCTGGGG
TTCCATTTGTGAAGTGA
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protein sequence of Tc05v2_p018560.1

>Tc05v2_p018560.1 ID=Tc05v2_p018560.1|Name=Tc05v2_p018560.1|organism=Theobroma cacao|type=polypeptide|length=189bp
MNPLSQFLLAILFFHSSEYILAVAIHGISNVSLTSLLVSKEYALAMVFSL
VEYYFEVLLFPGLKEHLWVSNLGLAMVVIGEIIRKLAIVTAGRSFTHLIK
RYHEEHHKLVTDGVYGFVRHPSYCGFLVWSVGTQIMLCNPIATIGFAVVV
WQFFAKRIPYEEYFLRQFFGADYEEYARRVPSGVPFVK*
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